Sequence 1: | NP_001246162.1 | Gene: | Dscam1 / 35652 | FlyBaseID: | FBgn0033159 | Length: | 2038 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_012822352.2 | Gene: | il6st / 100489642 | XenbaseID: | XB-GENE-855663 | Length: | 939 | Species: | Xenopus tropicalis |
Alignment Length: | 979 | Identity: | 182/979 - (18%) |
---|---|---|---|
Similarity: | 305/979 - (31%) | Gaps: | 317/979 - (32%) |
- Green bases have known domain annotations that are detailed below.
Fly 672 PQMRTNRISEKTSMISIPS----ASPAHTGRDTC--IASNKAGTTTYSVDLTVNVPPRWILEPTD 730
Fly 731 KAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYY 795
Fly 796 LCEAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVL-------QCEAKGEKPIGILWN 853
Fly 854 MNNMRLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSAL------------FTCVATNAFGSD 906
Fly 907 DAS------INMIVQEVP---------EMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFK 956
Fly 957 R-SRASWSEIDRVIVPGHTTEAQVQKLSPATTY--NIRIVAENAIG-TSQSSEAVTIITAEEAPS 1017
Fly 1018 GKP---QNI-KVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGK 1078
Fly 1079 EHNLELQNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQ--PPSDTACTTLT------- 1134
Fly 1135 ---SQTIRVGWVSPPLESANGVIKTYKVVYAP---SDEWYDETKRHYKKTASSDTVLHG----LK 1189
Fly 1190 KYTNYTMQVLATTAGGDGVRSV-PIHCQTEPDVPEAPTDVKALVMGNAAILVSWRPPA--QPNGI 1251
Fly 1252 ITQYTV-YSKAEGAETETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPS 1315
Fly 1316 DQVPAKIASFDDTFTATFKEDAKMPCLAVGAPQPEITWKIKGVEFSANDRMRV-------LPDGS 1373
Fly 1374 LLIKSVNRQDAGDYSCHAENSIAKDSITHKLIVLAPPQSP---------HVTLSATTTDALTVKL 1429
Fly 1430 KPHEGDTAPLHGYTLHYKPEFGEWETSEVSVDSQKHNI-EGLLCG---------SRYQV------ 1478
Fly 1479 -----------YAT----GFNNIGAGEASDILNTRTKGQKPKL-----PEKPRFI--EVSSNSVS 1521
Fly 1522 LHFK 1525 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Dscam1 | NP_001246162.1 | Ig | 38..130 | CDD:299845 | |
IG | 57..133 | CDD:214652 | |||
IG_like | 267..343 | CDD:214653 | |||
Ig | 269..340 | CDD:143165 | |||
IG_like | 353..425 | CDD:214653 | |||
IGc2 | 361..413 | CDD:197706 | |||
I-set | 433..527 | CDD:254352 | |||
IGc2 | 446..517 | CDD:197706 | |||
I-set | 533..618 | CDD:254352 | |||
IGc2 | 544..607 | CDD:197706 | |||
Ig | 641..714 | CDD:143165 | 9/47 (19%) | ||
IGc2 | 735..804 | CDD:197706 | 10/68 (15%) | ||
I-set | 819..914 | CDD:254352 | 18/119 (15%) | ||
Ig | 833..921 | CDD:299845 | 17/121 (14%) | ||
FN3 | 918..1011 | CDD:238020 | 25/105 (24%) | ||
FN3 | 1018..1116 | CDD:238020 | 18/101 (18%) | ||
FN3 | 1124..1217 | CDD:238020 | 23/110 (21%) | ||
FN3 | 1222..1312 | CDD:238020 | 21/92 (23%) | ||
Ig | 1339..1406 | CDD:299845 | 11/73 (15%) | ||
FN3 | 1409..1499 | CDD:238020 | 24/129 (19%) | ||
FN3 | 1504..1584 | CDD:238020 | 9/29 (31%) | ||
Dscam_C | 1890..2008 | CDD:289151 | |||
il6st | XP_012822352.2 | Lep_receptor_Ig | 26..109 | CDD:399379 | 7/41 (17%) |
FN3 | 128..>164 | CDD:419708 | 10/72 (14%) | ||
FN3 | 267..360 | CDD:238020 | 25/104 (24%) | ||
FN3 | 562..642 | CDD:214495 | 19/82 (23%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |