DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam1 and ncam2

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:XP_012811963.1 Gene:ncam2 / 100151722 XenbaseID:XB-GENE-1217730 Length:865 Species:Xenopus tropicalis


Alignment Length:704 Identity:172/704 - (24%)
Similarity:302/704 - (42%) Gaps:111/704 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   447 GPSVFLKCVAGGNPTPEISW-ELDGKKIANNDRYQVGQYVTVNGD-VVSYLNITSVHANDGGLYK 509
            |.|.:..|...|. ...|.| ...|:||.:      ||.|.|..: :.|:|.|...:.:|.|:|:
 Frog    64 GQSKYFTCTVIGE-ADNIDWFNPQGEKIIS------GQRVVVQREGIRSWLTIYKANVDDAGIYR 121

  Fly   510 CIAKSKVGVAEHSA-------KLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVW--ER 565
            |.|....|.|:.:.       ||....:|..::.::     ||...|.|.|:..|...:.|  .|
 Frog   122 CQATDSKGHAQEATVVLEIY
QKLTFEDVPSPQEFKR-----GENAEVLCLVSSSPAPMVRWLNNR 181

  Fly   566 DNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEG-YSARGSLE-----VQVMVLPQI 624
            ::.....:|:..:.||..|.|:|:.:. |:..|.|     || ...||.::     |.|.|.|:|
 Frog   182 EDVTDIDDRRFAMLPNNNLQIKNISKR-DEGIYRC-----EGRVEVRGEIDFRDISVIVNVPPEI 240

  Fly   625 VPFAYEDLINMG----DSIDLFCQIQKGDRP-IKVHWSFERSAGDYGFDQVQPQMRTNRISEKTS 684
            :  |.:...|..    :.|.|||:.....:| |..|.:.:....:..:|          :.|..:
 Frog   241 L--AQQRSFNATADRLEDITLFCRATGSPKPYITWHRNGKLVEENEKYD----------LREDNT 293

  Fly   685 MISIPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKADGFP 749
            .:::.:.....:|...|.|:||||.|.....|.|.|.|. |::..::...:.....:.|:|:|.|
 Frog   294 ELTVKNIISTDSGLYVCRATNKAGFTEKQSFLQVFVQPH-IVQLQNETTIEHGHVTLTCEAEGEP 357

  Fly   750 KPQVTWKKAVGDTPGE-YKDLKKSDNIRVE------EGTLHVDNIQKTNEGYYLCEAINGIGSGL 807
            .|::|||::   :.|. :.|..||.:.|:|      :.:||:.::..::.|.|.|||.:.|| |.
 Frog   358 IPEITWKRS---SDGMIFYDGDKSQDGRIESTGHHGKSSLHIKSVMLSDAGRYDCEAASRIG-GH 418

  Fly   808 SAVIMISVQAPPEFTEKLRNQT---ARRGEPAVLQCEAKGEKPIGILWNMNNMRLDPKN-DNRYT 868
            ...:.::::..|:|   :.|||   :....|..:.|:.....|..|.|:.:.:.|..:| .|..|
 Frog   419 QKSMYLNIEYAPKF---ISNQTIYYSWENNPINISCDVTSNPPSSIYWSRDKLLLPARNITNIKT 480

  Fly   869 IREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEVPEMPYALKVLDKSGRS 933
            .|:     |....|.|.....:|...:.|.|.|:.||......:.:.:||..||.|:|::.|...
 Frog   481 YRD-----GKRILLEITPLSDNDFGRYNCTAINSIGSRIQEYILTLADVPSSPYGLRVIELSQTY 540

  Fly   934 VQLSWAQP-YDGNSPLDRYIIEFKR-SRASWSEIDRVIVPGHTTEAQV--QKLSPATTYNIRIVA 994
            .::.:.:| ..|..|:..|.::||. |...|.     :|..|.|:..:  ..|...|||.:::.|
 Frog   541 AKVFFNKPDSHGGVPIHHYQMDFKEVSSEIWK-----VVRSHGTQTIIVLGNLDANTTYEVKVAA 600

  Fly   995 ENAIGTSQSSEA---VTIITAEEAP---SGKP---QNIKVEPVNQTTMRVTWKPPPRTEWNGEIL 1050
            .|..|..:.|:.   .|:...|.:|   .|:|   ::.|:....|            .:....||
 Frog   601 VNGKGKGEYSKTEIFQTLPVREPSPPSIHGQPGGGKSFKLSITKQ------------DDGGAPIL 653

  Fly  1051 GYYVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVYTQYSVVIQAFNKIG 1104
            .|.|.|:..:....::.:  .|:   |.:..:.|.:|:....|.|.|.|.|::|
 Frog   654 NYVVKYRSKDKEDQWLEK--KFL---GNKDYIILDHLQWNVGYEVHIIATNRLG 702

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352 25/88 (28%)
IGc2 446..517 CDD:197706 21/71 (30%)
I-set 533..618 CDD:254352 22/92 (24%)
IGc2 544..607 CDD:197706 17/64 (27%)
Ig 641..714 CDD:143165 16/73 (22%)
IGc2 735..804 CDD:197706 21/75 (28%)
I-set 819..914 CDD:254352 24/98 (24%)
Ig 833..921 CDD:299845 21/88 (24%)
FN3 918..1011 CDD:238020 26/99 (26%)
FN3 1018..1116 CDD:238020 19/90 (21%)
FN3 1124..1217 CDD:238020
FN3 1222..1312 CDD:238020
Ig 1339..1406 CDD:299845
FN3 1409..1499 CDD:238020
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
ncam2XP_012811963.1 Ig 50..141 CDD:386229 23/83 (28%)
IG_like 150..234 CDD:214653 23/94 (24%)
Ig 237..330 CDD:386229 23/104 (22%)
Ig 329..426 CDD:386229 27/101 (27%)
IG_like 442..520 CDD:214653 19/82 (23%)
FN3 525..617 CDD:238020 25/96 (26%)
fn3 623..706 CDD:365830 20/97 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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