DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam1 and il6st

DIOPT Version :9

Sequence 1:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster
Sequence 2:NP_001106976.1 Gene:il6st / 100006778 ZFINID:ZDB-GENE-080104-6 Length:866 Species:Danio rerio


Alignment Length:972 Identity:190/972 - (19%)
Similarity:321/972 - (33%) Gaps:303/972 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   724 WILEPTDKAFAQGS----------DAKVE------------CKADG---FPKPQVTWKKAVGDTP 763
            |:|......:|:||          |:|.:            |...|   |....:.|..:..:|.
Zfish     7 WLLVLMLLHYAKGSNSSCVLKILPDSKTKIPVELERNFTATCHLQGGSEFTSNDIKWSFSNKETT 71

  Fly   764 GEYKDLKKSDNIRVEEGTLHVD-NIQKTNEGYYL-CEA----INGIGSGLSAVIMISVQAPPEFT 822
               ..|.|:...::.|.::.|. |:.| |.|:.| |||    :..:|. .:..|.:....||.  
Zfish    72 ---DILSKTFYHKINETSVSVTVNLSK-NMGHMLMCEASRESLTYMGK-CAYGIYLDAGYPPM-- 129

  Fly   823 EKLRNQTARRGEPAVLQCEAKGEK-----PIGILWNMNNMRLDPKNDNRYTIREEI--------- 873
                       :|..|.|.|...|     .:...|. ..:| ||.....||:..::         
Zfish   130 -----------KPKNLTCIALQRKKDISPDLNCYWE-PGLR-DPLLATNYTLYAQVGQDLYNSTC 181

  Fly   874 -----------LST-----------GVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQE 916
                       |||           .|.:||.   :||||...:.            |::::...
Zfish   182 KQSLARSCTVNLSTYPVHMTLKVWVEVKNSLG---SERSDEHEYD------------SLSLVKPN 231

  Fly   917 VPEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRSR---ASWSEIDRVIVPGHTTEAQ 978
            .|.:  .:||.:....|..:.|  .||......|:....:..:   :.|.::.......|.|..:
Zfish   232 PPNV--EVKVEEDFPTSFVVKW--EYDIEDTTMRFSSAIRYCQVGSSDWKKVPENYTNVHITSYR 292

  Fly   979 VQKLSPATTY--NIRIVAENAIGTSQSSEAVTIITAEEAPSGKP--------QNIKVEPVNQT-T 1032
            :|.|.|.|.|  .:|.:.|:....|:.|..||:.|.|......|        :.:......|| .
Zfish   293 LQSLEPYTEYVVQMRSIGEHYTIWSEWSSNVTVRTPEAREFPLPFLKCVALCEVVNASLYEQTLD 357

  Fly  1033 MRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLEL---QNLRVYTQYS 1094
            :.:..|||.:.  ||::..|  ...:|..|.::....|. ..:..:.::||:   :|.      |
Zfish   358 LSILTKPPVKA--NGKMCNY--SLIISQDNQAFESHVIK-ADQLNQRYSLEVPPEENA------S 411

  Fly  1095 VVIQAFNKIGAGPLSEEEKQFTAEGTPSQ----PPSDTACTTLTSQ-------TIRVGWVSPPLE 1148
            :.|.|||..|              |:|..    |.|:.....:.|.       .:.|.|......
Zfish   412 IEITAFNSAG--------------GSPKTILFIPRSNDEFLGVASMRWWVHDGKLHVEWGPLKQH 462

  Fly  1149 SANGV-IKTYKVVYAPSDEWYDE--TKRHYKKTAS--SDTVLHG-LKKYTNYTMQVLATTAGGDG 1207
            ..:|: |..|.:      ||.:|  .:..:::...  :.|:|:| |.||..|.:.|         
Zfish   463 PPHGIHISEYLL------EWVNEKDVQPQWQRVPKNVNTTILNGNLAKYKQYNISV--------- 512

  Fly  1208 VRSVPI---------HCQ-----TEP-----DVPE-APTDVKALVMGNAAILVSWR--PPAQPNG 1250
               .||         |.|     |:|     ..|| .||....:...|:..|: |.  |.....|
Zfish   513 ---YPIYKFYYDGRWHFQAGTPVTKPAYVQQGAPEKGPTVTDTISKKNSVTLI-WEEIPLDHRYG 573

  Fly  1251 IITQYTVYSKAEGAETETKTQKVPHYQMSFEATELEKNKPYEFWVTASTTIG------------- 1302
            .|..||::.:...||.::..  |.....|:..|:|...:.|...:.|||..|             
Zfish   574 FIQNYTIFYRTGNAEWQSVL--VAANIHSYVLTDLVSERDYVVHIMASTEAGSKNGTDFNFKTMK 636

  Fly  1303 --EGQQSKSIVAM--------------------------------PSDQVPAKIASFDDTFTATF 1333
              :|:....:|.:                                |||   :.||.:...|..  
Zfish   637 FADGEVEMIVVLVCLGFLFLSVFTIMLCLRKREVIKKLLWPQVPDPSD---SSIAHWSPDFPV-- 696

  Fly  1334 KEDAKMPCLAVGAPQPEITWKIKGVEFSANDRMRVLPDGSLLIKSVNRQDAGDYSCHAENSIAKD 1398
              ..:||...|...:.::   ..|......|:: |||     :|. ::..:.::|.....|....
Zfish   697 --KTEMPKEDVSVVEVDV---FDGKSLCEEDKV-VLP-----LKK-DKYLSEEHSSGIGGSSCMS 749

  Fly  1399 SITHKLIVLAPPQSPHVTLSATTTDALTVKLKPHEGDTAPLHGYTLHYKPEFGEWETSEVSVDSQ 1463
            |..|.:.......|...|  |:|....:|....::|.|..      |..|.|...|:::..:|.:
Zfish   750 SPRHSVSDSDEGDSGQTT--ASTVQYSSVVASGYKGQTPN------HQPPTFARSESTQPLLDCE 806

  Fly  1464 KH--NIEGLLCGSRYQVYATG------------FNNIGAGEASDILNTRTKGQKPKLPEKPR 1511
            :|  |..    |.|...:..|            |:.:...|||.:::     ..|.|...|:
Zfish   807 EHPENHP----GERNSYFRRGRELEPQSIDEPVFSAVQEEEASPVVD-----DAPALSYMPQ 859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352
IGc2 446..517 CDD:197706
I-set 533..618 CDD:254352
IGc2 544..607 CDD:197706
Ig 641..714 CDD:143165
IGc2 735..804 CDD:197706 21/99 (21%)
I-set 819..914 CDD:254352 23/130 (18%)
Ig 833..921 CDD:299845 23/123 (19%)
FN3 918..1011 CDD:238020 22/97 (23%)
FN3 1018..1116 CDD:238020 21/109 (19%)
FN3 1124..1217 CDD:238020 23/119 (19%)
FN3 1222..1312 CDD:238020 24/107 (22%)
Ig 1339..1406 CDD:299845 13/66 (20%)
FN3 1409..1499 CDD:238020 21/103 (20%)
FN3 1504..1584 CDD:238020 3/8 (38%)
Dscam_C 1890..2008 CDD:289151
il6stNP_001106976.1 FN3 127..219 CDD:304408 22/109 (20%)
FN3 230..327 CDD:238020 22/100 (22%)
FN3 543..624 CDD:214495 22/83 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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