DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Br140 and SDG16

DIOPT Version :9

Sequence 1:NP_001286155.1 Gene:Br140 / 35648 FlyBaseID:FBgn0033155 Length:1430 Species:Drosophila melanogaster
Sequence 2:NP_194520.3 Gene:SDG16 / 828904 AraportID:AT4G27910 Length:1027 Species:Arabidopsis thaliana


Alignment Length:476 Identity:121/476 - (25%)
Similarity:189/476 - (39%) Gaps:112/476 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 CCICLDGECQNTNVILFCDMCNLAVHQDCYGVPYIPE-GQWLCRRCLQSPSKPVNCVLCPNAGGA 349
            |.:|...|..:.|.|:.|:.|.:||||:|||..::.: ..|:|:.| :.|.....|.|||..|||
plant   595 CAVCRWVEDWDYNKIIICNRCQIAVHQECYGARHVRDFTSWVCKAC
-ERPDIKRECCLCPVKGGA 658

  Fly   350 FKQTD-HGQWAHVVCALWIPEVRFANTVFLEPIDSIETIPPARWRLTCYVCKEKGLGACIQCHRN 413
            .|.|| ...|.||.||.:.|||.||:...:||...|.:||...:...|.:||:.. |:|.||.:.
plant   659 LKPTDVETLWVHVTCAWFQPEVCFASEEKMEPAVGILSIPSTNFVKICVICKQIH-GSCTQCCKC 722

  Fly   414 SCYAAFHVTCAQQAGLYMTMDTV-KDGHNDSSMHVQKFAYCHAHTPADAKLKMNVPDFEDTRHKM 477
            |.|  :|..||.:||..|.:..: |:|...:.| |...||..|..| |..|.:..|....:...:
plant   723 STY--YHAMCASRAGYRMELHCLEKNGQQITKM-VSYCAYHRAPNP-DNVLIIQTPSGAFSAKSL 783

  Fly   478 KEARK-------ALAKKRSTAPVVLIPTIPPDRVQEIATMVTMQR---KKEFLDRIIAYWTL-KR 531
            .:.:|       :|.::...||..  .||..|........|..::   ||...:..|.:.|. .|
plant   784 VQNKKKGGSRLISLIREDDEAPAE--NTITCDPFSAARCRVFKRKINSKKRIEEEAIPHHTRGPR 846

  Fly   532 HYRNG----------VP-----------LLRRLQSQGNNHGVIQRNGIEGSPDTGELYRQLKYWQ 575
            |:.:.          ||           .|..||....:.....|:||.|             |.
plant   847 HHASAAIQTLNTFRHVPEEPKSFSSFRERLHHLQRTEMDRVCFGRSGIHG-------------WG 898

  Fly   576 CL-RQDLERARLLCELVRKREKLKVAFVR---------------ISEEVVMLQLNPLEAALNKLL 624
            .. |::::...::.|...::.:..:|.:|               ||||||               
plant   899 LFARRNIQEGEMVLEYRGEQVRGSIADLREARYRRVGKDCYLFKISEEVV--------------- 948

  Fly   625 DALEARDSMQIFREPVDTSEVPD-YTDIVKQPMDLGTMRAKL-----------KECQYNSL---- 673
              ::|.|...|.| .::.|..|: |..|    |.:|...:::           :|..|:.|    
plant   949 --VDATDKGNIAR-LINHSCTPNCYARI----MSVGDEESRIVLIAKANVAVGEELTYDYLFDPD 1006

  Fly   674 --EQLEADFDLMIQNCLAYNN 692
              |:|:........||..:.|
plant  1007 EAEELKVPCLCKAPNCRKFMN 1027

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Br140NP_001286155.1 EPL1 <192..264 CDD:287484
PHD_BRPF 283..336 CDD:277047 18/50 (36%)
ePHD_BRPF 340..456 CDD:277140 46/117 (39%)
Bromo_brd1_like 615..712 CDD:99944 18/96 (19%)
BR140_related 1303..1414 CDD:99900
SDG16NP_194520.3 WHSC1_related 205..308 CDD:99899
PHD_SF 401..451 CDD:304600
PHD_ATX3_4_5_like 594..640 CDD:276970 16/44 (36%)
ePHD_ATX3_4_5_like 649..760 CDD:277133 45/114 (39%)
SET 886..1004 CDD:214614 28/152 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13793
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X459
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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