DRSC/TRiP Functional Genomics Resources

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Protein Alignment Br140 and brpf3

DIOPT Version :9

Sequence 1:NP_001286155.1 Gene:Br140 / 35648 FlyBaseID:FBgn0033155 Length:1430 Species:Drosophila melanogaster
Sequence 2:XP_031751953.1 Gene:brpf3 / 779492 XenbaseID:XB-GENE-6092087 Length:992 Species:Xenopus tropicalis


Alignment Length:1443 Identity:434/1443 - (30%)
Similarity:596/1443 - (41%) Gaps:544/1443 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 PLTPVLTPSRKKARSRSGGHHSTPRPH--KDHPTPGGGGAEARNGCSSASAGGGSASGVSARQYA 116
            |.|.:..| |:|.|...||...:|.|:  |..||                               
 Frog     6 PSTDMRNP-RRKFRHCGGGGKGSPSPYSLKCSPT------------------------------- 38

  Fly   117 NPESLVSYNEEEATVTFNLDGKSVRLGIDDALPLVEDEEFAALVARGCILNAD------APPLEE 175
              ...::|.:.:..|...::|:..|:.|.|.|.:|.::|..|.....|..|.:      |.|..:
 Frog    39 --RETLTYAQAQRMVEVEMEGRLHRISIYDPLRIVSEDELTAHDIIECNSNKENSELPLASPCRK 101

  Fly   176 NA-----------------------PWARVQVPVARVAEIPDYRVSDAPPRPLAYYRFIEKSLEE 217
            .|                       |..||..|.:...|...|.:.|      ::|.:||:|.:|
 Frog   102 MAFKSKKHELCPKQAQTTSSLQLPQPCFRVIEPFSLEVESEPYSLPD------SFYCYIERSTKE 160

  Fly   218 LDGEVEYDVDEEDSAWLEHMNEERQRLGLNAVGIDTMELLMDRLEKESHFQAAANGTPTGVEVDD 282
            :|.|||||:||.|.||||.:||:|:..||:.|..|..|||:|||||||:.|:..:|.|... :|:
 Frog   161 MDQEVEYDLDEVDLAWLEMINEKRKNDGLSLVSADVFELLLDRLEKESYMQSRRSGAPQSA-IDE 224

  Fly   283 DAVCCICLDGECQNTNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLQSPSKPVNCVLCPNAG 347
            ||.||:|||.||.|:|.|||||:|||||||:|||||||||||||||.|||||||||:||||||.|
 Frog   225 DAFCCVCLDDECHNSNAILFCDICNLAVHQECYGVPYIPEGQWLCRCCLQSPSKPVSCVLCPNQG 289

  Fly   348 GAFKQTDHGQWAHVVCALWIPEVRFANTVFLEPIDSIETIPPARWRLTCYVCKEKGLGACIQCHR 412
            ||||||..|:|||||||:|||||.|||||||||::.:..||.|||:||||:||:||.||.||||:
 Frog   290 GAFKQTSDGRWAHVVCAIWIPEVCFANTVFLEPVEGVNNIPSARWKLTCYLCKQKGRGAAIQCHK 354

  Fly   413 NSCYAAFHVTCAQQAGLYMTMDTVKD-GHNDSSMHVQKFAYCHAHTP----------ADAKL--K 464
            .:||.||||||||:|||:|.::.|:: |.|.::..|:|.|:|..|.|          ...|:  |
 Frog   355 VNCYTAFHVTCAQRAGLFMKVEPVRETGLNGTTFTVRKTAFCELHCPPGTHKKGILRCGGKVDNK 419

  Fly   465 MNVPDFEDTRHKMKEARKALAKK-----------------RSTAPVVLIPTIPPDRVQEIATMVT 512
            .|..:.|..|...|.::|...|:                 |.:|||:.:..||..|:.:|::.|.
 Frog   420 DNGKEDEANREDSKFSKKGAGKRGREKQKIKREQKETVCGRVSAPVMTVMQIPSCRLSKISSGVC 484

  Fly   513 MQRKKEFLDRIIAYWTLKRHYRNGVPLLRRLQSQGNNHGVIQRNG--IEGSPDTGELYRQLKYWQ 575
            :|:|..||.|:..||.|||..||||||:|||.|    |...||:.  .|....|..:..:|||||
 Frog   485 LQKKTHFLQRLHNYWLLKRQSRNGVPLIRRLHS----HMQSQRSAELKEQDERTSAVKEELKYWQ 545

  Fly   576 CLRQDLERARLLCELVRKREKLKVAFVRISEEVVMLQLNPLEAALNKLLDALEARDSMQIFREPV 640
            .||.||||||||.||:|||||||...|::.:..:.|||.|....|...||.|:.:||..||.|||
 Frog   546 KLRHDLERARLLTELIRKREKLKREQVKLHQAAMELQLTPFTVFLRTTLDLLQEKDSANIFTEPV 610

  Fly   641 DTSEVPDYTDIVKQPMDLGTMRAKLKECQYNSLEQLEADFDLMIQNCLAYNNKDTVFYRAGIRMR 705
            :..|||||.:.:..|||..|||.||:..||.||...|.||:||:.|||.||:::|||::|.:|:.
 Frog   611 NLKEVPDYRNFIVHPMDFSTMRQKLEGHQYTSLHAFEDDFNLMVSNCLRYNSQETVFHQAALRLH 675

  Fly   706 DQAAPLFVQVRKELQRDG------LLARSQRYHVDHVEAEVEQELRLLLAAPASEGIVQ---KLL 761
            ...|.:....|::::..|      |....|....|:.....::..:|||  |.:...:.   :|.
 Frog   676 QLGAAILRHARRQVESTGYDPQTCLHLPEQPRTADYYRVSWDEVDQLLL--PENRAHLSPECQLK 738

  Fly   762 ILADKSQVLKNPTYRTKKIKQIRLEISRMRKSLQKARFAARHSSHANQSQSDDEDTLGGSPSKKR 826
            .|.:|.:|:.  ::||...:..||.:.|...:|.:.|.|.|                        
 Frog   739 ELLEKLEVVN--SFRTSGARTRRLRLLRKEINLLRQRLAPR------------------------ 777

  Fly   827 TRKRFNSSGVDMELGHDDDDEEEDSDEDSMGEDTVSKDLLNSTQTPPCSPIKSLNNSSSPVGINR 891
                            ..|.:|.|                                         
 Frog   778 ----------------SRDPQETD----------------------------------------- 785

  Fly   892 RTAILLTRKAQAALKRPSEPLTTPVKEEQHNSQSSNTQSTSGSSSSVTTAATAASSGAGTLNHVL 956
                                                                     ||.:|   
 Frog   786 ---------------------------------------------------------AGVIN--- 790

  Fly   957 SSAPPTASSFALTQNNSSGGGALASGTGIGGSSSAGTAAAASLTSTALAMNSKLSANLPVKSPKR 1021
                                       |.|..:.:|:.:.:|...:.|.:.:...:.:|:..|  
 Frog   791 ---------------------------GFGNHTESGSDSDSSSVLSRLTVLNCCGSLMPLGKP-- 826

  Fly  1022 PGRYRRVPEVRHSSSMSPKKSPNPAVTVSQALPMPETLPFERIPDSFRVYRANNQRDVSDSDDAP 1086
              ...|||.                              ||                        
 Frog   827 --ALLRVPF------------------------------FE------------------------ 835

  Fly  1087 SQSSSPCSSCSDFSMSGSCSDFDSDEASEGDADGDPDRDGGRSRSEERDSTSQEGTTDAMDMQHA 1151
                         :|:|   |||                                          
 Frog   836 -------------TMNG---DFD------------------------------------------ 842

  Fly  1152 SLNNVQGNNGNMAISSSSGGSGGSSSEDDELEERPLSARQNKPMKVGTRGTPTPTTMARAVALSA 1216
              .|.||.                                                         
 Frog   843 --YNYQGR--------------------------------------------------------- 848

  Fly  1217 GRGRGKRRSNLSESTSSTATPPPLRRAGKLRSATPNASPLVNNIKARRNTTAAGSAPLTNNNRSK 1281
                                                 |||:                        
 Frog   849 -------------------------------------SPLM------------------------ 852

  Fly  1282 HSEDSASSERHNNHSHGQKPALEPLQLVWAKCRGYPWYPALILDPKTPK-GFVYNGVPLPAPPTD 1345
             |.|:...             |:|||||||||||||.|||||:|||.|: |.::||||:|.||.:
 Frog   853 -SFDAGVE-------------LQPLQLVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLE 903

  Fly  1346 VLALRK----NCLDEIVFLVLFFDVKRTWQWLPANKLDILGIDKQLDQQKLVESRKPAERKAVKK 1406
            ||.|.:    ....:.:|||||||.||||||||::|:..||.|..||:.|::|.||.:.||:|:.
 Frog   904 VLNLGEQRHIEAEGQQLFLVLFFDNKRTWQWLPSDKVIPLGADDTLDKLKMLEGRKASIRKSVQV 968

  Fly  1407 AYQDALHYQSQVS 1419
            ||..|::::|:||
 Frog   969 AYDRAMNHRSRVS 981

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Br140NP_001286155.1 EPL1 <192..264 CDD:287484 34/71 (48%)
PHD_BRPF 283..336 CDD:277047 43/52 (83%)
ePHD_BRPF 340..456 CDD:277140 75/116 (65%)
Bromo_brd1_like 615..712 CDD:99944 45/96 (47%)
BR140_related 1303..1414 CDD:99900 65/115 (57%)
brpf3XP_031751953.1 EPL1 58..207 CDD:402235 51/154 (33%)
COG5141 165..610 CDD:227470 236/449 (53%)
PHD_SF 282..399 CDD:419867 75/116 (65%)
Bromodomain 585..682 CDD:413371 45/96 (47%)
BR140_related 860..976 CDD:99900 65/115 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I3003
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 750 1.000 Inparanoid score I570
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D566217at2759
OrthoFinder 1 1.000 - - FOG0001002
OrthoInspector 1 1.000 - - otm48902
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1726
SonicParanoid 1 1.000 - - X459
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.090

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