DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Br140 and Alh

DIOPT Version :9

Sequence 1:NP_001286155.1 Gene:Br140 / 35648 FlyBaseID:FBgn0033155 Length:1430 Species:Drosophila melanogaster
Sequence 2:NP_001262332.1 Gene:Alh / 40850 FlyBaseID:FBgn0261238 Length:1717 Species:Drosophila melanogaster


Alignment Length:1208 Identity:268/1208 - (22%)
Similarity:402/1208 - (33%) Gaps:410/1208 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 CCICLDGECQNTNVILFCD--MCNLAVHQDCYGVPYIPEGQWLCRRC-LQSPSKPVNCVLCPNAG 347
            ||:|.|......|.:::||  .|.:||||.|||:..:|.|.|.||:| .|..:..|.|.|||:..
  Fly    61 CCVCSDERGWPENPLVYCDGQNCTVAVHQACYGIVTVPTGPWYCRKC
ESQERTSRVRCELCPSRD 125

  Fly   348 GAFKQTDHGQWAHVVCALWIPEVRFANTVFLEPIDSIETIPPARWRLTCYVCKEKG------LGA 406
            ||.|:||:..||||||||:||||||.|...:||| .:..||..|:..|||:|:|.|      :||
  Fly   126 GALKKTDNSGWAHVVCALYIPEVRFGNVTTMEPI-ILSLIPQERYSKTCYICQEIGKPNRANVGA 189

  Fly   407 CIQCHRNSCYAAFHVTCAQQAGLYMT-----MDTVKDGHNDSSMHVQKFAYCHAHTPADAKLK-- 464
            |:||::::|...|||||||..||...     :|.||           ...||..|.   :|||  
  Fly   190 CMQCNKSNCKQQFHVTCAQSLGLLCEEAGNYLDNVK-----------YCGYCQHHY---SKLKKG 240

  Fly   465 ---MNVPDFEDTRHKM---------KEARKALAKKRSTAPVVLIPTIPPDRVQEIATMVTMQRKK 517
               ..:|.::..:|..         ||....:....::|.::.|.:                   
  Fly   241 GNVKTIPPYKPIQHDTSSDSCSSPEKEIDSTMNSATTSATIIKITS------------------- 286

  Fly   518 EFLDRIIAYWTLKRHYRNGVPLLRRLQSQGNNHGVIQRN---GIEGSPDTGELYRQLKYWQCLRQ 579
                            .:|        |.|.:..|:..:   ||.....:|.             
  Fly   287 ----------------SSG--------SAGGSSNVLNASSSAGISAGSSSGS------------- 314

  Fly   580 DLERARLLCELVRKREKLKVAFVRISEEVVMLQLNPLEAALNKLLDALEARDSMQIFREP----- 639
                                   .:|......:.|    |.:|...:..:..|......|     
  Fly   315 -----------------------GVSSSAKQRKSN----ASSKSSSSSSSSSSSSTGGAPNPSSS 352

  Fly   640 -VDTSEVPDYT---DIVKQPMDLGTMRAKLKECQYNSLEQLEADFDLMIQNCLAYNNKDT----- 695
             |.:....:.|   .::....::|.:.        |||           .|.|...:..|     
  Fly   353 SVHSGSASNMTGGGSVLPGSSNIGNIS--------NSL-----------NNNLPGGSSSTSSAGN 398

  Fly   696 VFYRAGIRMRDQAAPLFVQVRKELQRDGLLARSQRYHVDHVEAEVEQELRLLLAAPASEGIVQKL 760
            |...:|                     |:::.|                        |.|..|  
  Fly   399 VPGGSG---------------------GIISAS------------------------SGGATQ-- 416

  Fly   761 LILADKSQVLKNPTYRTKKIKQIRLEISRMRKSLQKARFAARHSSHANQS-QSDDEDTLGGSPSK 824
               :..||....|. .||.        |....|.....:..:||...::| .|.|:|  |...|.
  Fly   417 ---STSSQSSTAPG-TTKS--------SASSSSSSSNSYKEKHSKSLSKSTSSKDKD--GKDSST 467

  Fly   825 KRTRKRFNSSGVDMELGHDDDDEEEDSDEDSMGED-------TVSKDLLNSTQTPPCSPIKSLNN 882
            ......|.:|.......:.....|:.|.:.|..:|       |.|....:|..|.|.|...:...
  Fly   468 NSANNNFTNSSASSTSSNSSSTREKSSSKLSKNKDSNQVPSATSSLSTTSSINTQPSSSTSTATA 532

  Fly   883 SSSPVGINRRTAILLTRKAQAALKRPSEPLTTPVKEEQHNSQSSNTQSTSGSSSSVTTAATAASS 947
            .|...|.:      ::..|.:.|                ||..|.|...|..:.:::|..|.|.|
  Fly   533 GSGGTGTH------VSSSAASGL----------------NSAPSTTNEHSNHAHTLSTNGTGAGS 575

  Fly   948 GAGTLNHV-------------LSSAPPTASSFALTQNNSSGG----------------------- 976
            .||.|..|             |.|...::||   |.|:|:||                       
  Fly   576 AAGKLQSVSNLSNSSSGFGSDLRSVSTSSSS---TVNDSTGGFGSNSNSERENLSGAGSSASNMP 637

  Fly   977 GALASGTGIGGSSSAGT-----------AAAASLTSTALAMNSKLSANLPVKSPKRPGRYRRVPE 1030
            |.:|.||| |.||||.|           :.|.|||||:.:..|  |:|   .|.|:    |:...
  Fly   638 GTIAPGTG-GVSSSAATNLSTNKGGSSSSTANSLTSTSTSSGS--SSN---SSSKK----RKADS 692

  Fly  1031 VRHSSSMSPKKSP----NPAVT------VSQAL-PMPETLPFER-IPDSFRVYRA-----NNQRD 1078
            .:.:||:|...|.    |..::      |..|| |:.:   ||: |..|.:..|.     .:|..
  Fly   693 AKSTSSISTSGSALEDNNSLISRYDIKDVQVALTPLTD---FEKEIEKSSKRQRTELSPPTHQTS 754

  Fly  1079 VSDSDDAPSQSSSPCS------------------SCSDFSMSGSCSDFDSDEASEGDADGDPDRD 1125
            .:...:||..||:..|                  :....|:||:.....|..:|...|.|.....
  Fly   755 ATAEVNAPLASSTSASIAVTASATAASAPPATGTTTLGSSISGNAGSTSSGNSSGVSATGGAQSA 819

  Fly  1126 GGRSRSEERDSTSQEGTTDAMDMQHASLNNVQGNNGN--MAISSSS---GGSGGSSSEDDELEER 1185
            .|.....:.:|:...||..|.....:|.|.....:|:  ..|||||   ..:..|||........
  Fly   820 VGSGGYPKTESSKSSGTASAGSGSGSSSNTSSTKHGSNIKDISSSSNQQASTASSSSAPSLYVSV 884

  Fly  1186 PLSARQNKPMKVGTRGTPTPTTMARAVALSAGRGRGKRRSNLSESTSSTATPPPLRRAGKLRSAT 1250
            |||......:.:.|..|.:.||.....|.|  |..|.:..:..:.:::...||....||.....|
  Fly   885 PLSTANVPGINLPTSSTSSSTTSESHSASS--RSSGAQSQHQQQLSNALVGPPMGGSAGAFHGGT 947

  Fly  1251 PNA-------------SPLVNNIKARRN--------------------TTAAGS----------- 1271
            .:|             ||.:..:.:..:                    ||.:|:           
  Fly   948 TSAGSSSVIQQQSGKSSPALGTLVSGNSGGSIISASGFPLPSGNLTATTTESGNLKISYEKQTTR 1012

  Fly  1272 --------APLTNNNRSKHSEDSASSERHNNHSHGQKP 1301
                    ||....:||:..|..:|....:.|.|...|
  Fly  1013 VQQLQEQEAPPARRSRSRSGESGSSHHHAHAHHHHHHP 1050

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Br140NP_001286155.1 EPL1 <192..264 CDD:287484
PHD_BRPF 283..336 CDD:277047 22/52 (42%)
ePHD_BRPF 340..456 CDD:277140 56/126 (44%)
Bromo_brd1_like 615..712 CDD:99944 15/110 (14%)
BR140_related 1303..1414 CDD:99900
AlhNP_001262332.1 PHD_AF10_AF17 60..107 CDD:277049 20/45 (44%)
ePHD_AF10_like 118..233 CDD:277142 56/126 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464537
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D566217at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm3222
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR13793
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1726
SonicParanoid 00.000 Not matched by this tool.
65.980

Return to query results.
Submit another query.