DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Br140 and rno

DIOPT Version :9

Sequence 1:NP_001286155.1 Gene:Br140 / 35648 FlyBaseID:FBgn0033155 Length:1430 Species:Drosophila melanogaster
Sequence 2:NP_001246528.1 Gene:rno / 38027 FlyBaseID:FBgn0035106 Length:3241 Species:Drosophila melanogaster


Alignment Length:1639 Identity:375/1639 - (22%)
Similarity:564/1639 - (34%) Gaps:573/1639 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 GLQYHLMKYDHDNPQ-----PLTPVLTPS-RKKARSRSGGHHST-------------------PR 78
            |.|.|...: |..||     .:.|...|: |:|.|..:|...:.                   |.
  Fly     8 GNQQHHQSH-HPPPQQHQRKDVEPQPPPTKRRKGRPPNGATTAAVAEVTGSGPATGSERVPVLPL 71

  Fly    79 PHKDHPTPG---GGGAEARNGCSSASA------------------GGGSASGVSARQYANPESLV 122
            ....|..||   |||.:.|....:.|.                  |..|:|...||..|:.:...
  Fly    72 CKSKHEEPGAEAGGGGQGRAAAGATSTSKSKSTKLAKSASKCKSQGASSSSSWQARSVADIKMSS 136

  Fly   123 SYNEEEATVTFNLDGKSV--RLGIDDALPLVEDEEFAALVARGCILNADAPPLEENAPWAR---- 181
            .||.........|..|.:  .:.:.|:.||...|         .::..|        ||.:    
  Fly   137 IYNRSSTEAPAELYRKDLISAMKLPDSEPLANYE---------YLIVTD--------PWKQEWEK 184

  Fly   182 -VQVPV-------ARVAEIPDYRVSDAPPRPLAYYRFIEKSLEE---------------LDGEVE 223
             |||||       ..|..:|:..||.|....|...|::..:.:|               .:....
  Fly   185 GVQVPVNPDSLPEPCVYVLPEPVVSPAHDFKLPKNRYLRITKDEHYSPDLHYLTNVVALAENTCA 249

  Fly   224 YDVDEEDSAWLEHMNEERQRLGLNAVGIDTMELLMDRLEKESHFQAAA-----NGTPTGVEVDDD 283
            ||:|..|.|||...|.:|.:.|...:.....|.:::.||.....|...     .|  .|:|.|::
  Fly   250 YDIDPIDEAWLRLYNSDRAQCGAFPINATQFERVIEELEVRCWEQIQVILKLEEG--LGIEFDEN 312

  Fly   284 AVCCICLDGECQNTNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLQSPSKPVNCVLCPNAGG 348
            .:|.:|...:.:..|.::|||.||:.|||.|||:..||.||||||.|... .|| :||||||.||
  Fly   313 VICDVCRSPDSEEANEMVFCDNCNICVHQACYGITAIPSGQWLCRTCSMG-IKP-DCVLCPNKGG 375

  Fly   349 AFKQTDHGQ-WAHVVCALWIPEVRFANTVFLEPIDSIETIPPARWRLTCYVCKEKGLGACIQCHR 412
            |.|....|: ||||.||||||||.......:|||..|.:||.:||.|.|.:|: |.:|:||||..
  Fly   376 AMKSNKSGKHWAHVSCALWIPEVSIGCVDRMEPITKISSIPQSRWSLICVLCR-KRVGSCIQCSV 439

  Fly   413 NSCYAAFHVTCAQQAGLYMTMDTVKDGHNDSSMHVQKFAYCHAHTPADAKLKMNVPDF------- 470
            ..|..|:|||||.|.||.|.. .:::|:.:..:.::  :||..|:.:..| |.|....       
  Fly   440 KPCKTAYHVTCAFQHGLEMRA-IIEEGNAEDGVKLR--SYCQKHSMSKGK-KENAGSHGGGSASV 500

  Fly   471 -----------------------------EDTRHKMKEARKAL-AKKRSTAPVVLIPTIPPDRVQ 505
                                         ||.|.:....:..| :::|:.|..        .|:|
  Fly   501 ASAMQKANRYGSGAGGGADDGNNACGTTGEDPRRRKNHRKTELTSEERNQARA--------QRLQ 557

  Fly   506 EIATMVTMQRKKEF-----------------LDRIIA---YWTLK---RHYRNGVP-------LL 540
            |:        :.||                 .|.|:|   ||.||   ||.|..:|       ::
  Fly   558 EV--------EAEFDKHVNFNDISCHLFDVDDDAIVAIYNYWKLKRKSRHNRELIPPKSEDVEMI 614

  Fly   541 RRLQSQGN--NHGVIQRNGIEGSPDTGELYRQLKYWQCLRQDLERARLLCELVRKREKLKVAFVR 603
            .|.|.|.:  ||.::..                     |||||||.|.||.:|.:||||..:..:
  Fly   615 ARKQEQQDMENHKLVVH---------------------LRQDLERVRNLCYMVSRREKLSRSLFK 658

  Fly   604 ISEEVVMLQLNPLEAALNKLLDALEARDSMQIFREPVDTSEVPDYTDIVKQPMDLGTMRAKLKEC 668
            :.|:|...||..|:..      .||.:.:.|..::||               |||          
  Fly   659 LREQVFYKQLGVLDEM------RLEKQQTKQEQQQPV---------------MDL---------- 692

  Fly   669 QYNSLEQLEADFDLMIQNCLAY-NNKDTVFYRAGIRMRDQAAPLFVQVRKELQRDGLLARSQRYH 732
                             |.:.| |:..|::.|....:..|..|                  .:| 
  Fly   693 -----------------NAVIYANDGPTLYDRFYSSVGGQTVP------------------AQY- 721

  Fly   733 VDHVEAEVEQELRLLLAAPASEGIVQKLLILADKSQVLKNPTYRTKKIKQIRLEISRMRKSLQKA 797
                     |:|:.:|     |.::.||                               :|.::.
  Fly   722 ---------QDLKYIL-----EQLMGKL-------------------------------QSGKQG 741

  Fly   798 RFAARHSSHANQSQSDDEDTLGGSPSKKRTRKRFNSSGVDMELGHDDDDEEEDSDEDSMGEDTVS 862
            |      ..|:||.:..:.....||:||.      ::|:             .|...|..|.||:
  Fly   742 R------GRASQSPNKRKQPAKASPNKKL------NNGI-------------LSSRTSSPEKTVA 781

  Fly   863 KDLLNSTQTPPCSPIKSLNNSSSPVGINRRTAILLTRKAQAALKRPSEPLTTPVKEEQHNSQSSN 927
            ...:.:|.:...||     ...:|.|  ||.:     |:.||                   .:::
  Fly   782 GSKVGTTTSKVRSP-----PGKNPTG--RRAS-----KSSAA-------------------AATS 815

  Fly   928 TQSTSGSSSSVTTAATAASSGAGTLNHVLSSAPPTASSFALTQNNSSGGGALASGTGIGGSSSAG 992
            |.:.|...|::.::.|:.|| :||:                    |||..:.|:||....|||..
  Fly   816 THNKSQFHSNIRSSTTSHSS-SGTI--------------------SSGNSSSANGTSSSDSSSGS 859

  Fly   993 TAAAASLTSTALAMNSKLSANLPVKSPKRPGRYRRVPEVRHSSSMSPKKSPNPAVTVSQALPMPE 1057
            .:.:.|.:|:|.:..||                      |.|||.||.|..:.|.:|.|.....:
  Fly   860 DSGSESGSSSAGSGVSK----------------------RKSSSGSPLKKQSYARSVEQRQKQRQ 902

  Fly  1058 TLPFERIPDSFRVYRANNQRDVSDSDD------------------APSQSSSPCSSCSDFSMSGS 1104
            ....|.:..:...|  .:.|..|.|.|                  .|.||.| ..:.|..|.|..
  Fly   903 RRQNEAVAGASATY--PDSRSASSSSDGEDERCRNRQEPERGARRGPIQSKS-VPNRSQASRSKP 964

  Fly  1105 CSDFDSDEASEGDA--------------DGDPDRDGGRSRSEE---------RDSTSQEGTTDAM 1146
            .::.|..|.:...|              |.|.|.......|||         |:||:..|.    
  Fly   965 TTEADVGEGTGASARRKLSTTTRGLAQMDKDADESVSSDESEELLPLRGERQRESTTTSGL---- 1025

  Fly  1147 DMQHASLNNVQGNNGNMAISSSSGGSGGSSSEDDELE---ERPLSARQNK-------PMKVGTRG 1201
                |:..:..|.|....|.|.|..|.....:|.|.:   |..:|..||:       .||....|
  Fly  1026 ----ATTGSAIGRNLGQHIYSDSESSSSEQEKDQEEQATVESNVSDSQNQQTIRTKAAMKEFVPG 1086

  Fly  1202 TPTPTTMARAVALSAGRGRGKR--RSNLSESTSSTATPP--------------PLRRAGK----- 1245
            |...|:.....|.|..:.:..|  :...:...:||.|.|              |.|:|.|     
  Fly  1087 TAATTSSTSQAASSTSKAKNTREGKEGAASIGNSTKTKPNPNAKLYPADLLVVPQRQAAKKASEN 1151

  Fly  1246 LRSAT------PNAS-----PLVNNIKARRNTTAAGSAPLTNNNRSKHSEDSASSERHNNHSHGQ 1299
            :||..      |:.|     |.:|:|.....:....|:...:|...|.|.:....:.|...:.|:
  Fly  1152 MRSTNLATTLQPDVSDRVREPDINSISGTAKSKVKDSSSRVSNEADKSSLEKVRPKEHLQKTVGK 1216

  Fly  1300 KPALEPLQLVWAKCRGYPWYPALILDPKTPK-----GFVYNGVP-LPA-----PPTDV---LALR 1350
            .....|.:      ||....|     ||.||     ....|..| ||.     ||:.|   ::.:
  Fly  1217 TSESAPAE------RGKRGRP-----PKVPKDARPPSITENDKPALPTHTQSKPPSVVATPVSAK 1270

  Fly  1351 KNCLDEIVFLVLFFD----VKRTWQWLPANK--LDILGIDKQLDQQKLVESR------------- 1396
            .|      |.|....    .|:..:.|.::|  |:.......:..::.|.|.             
  Fly  1271 SN------FAVSLVPQRQAAKKAAEQLKSSKPVLESFSTGNDISDKETVTSATISGSGSSVPAAS 1329

  Fly  1397 ---KPAERKAVKKA 1407
               ||..|.::|:|
  Fly  1330 TPVKPTRRSSIKEA 1343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Br140NP_001286155.1 EPL1 <192..264 CDD:287484 20/86 (23%)
PHD_BRPF 283..336 CDD:277047 23/52 (44%)
ePHD_BRPF 340..456 CDD:277140 54/116 (47%)
Bromo_brd1_like 615..712 CDD:99944 16/97 (16%)
BR140_related 1303..1414 CDD:99900 29/141 (21%)
rnoNP_001246528.1 COG5141 250..>664 CDD:227470 144/459 (31%)
EPL1 <250..288 CDD:287484 11/37 (30%)
PHD_JADE 314..359 CDD:277048 22/44 (50%)
ePHD_RNO 367..480 CDD:277177 54/116 (47%)
TFIIA 2138..>2295 CDD:281188
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464538
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D566217at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm3222
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR13793
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1726
SonicParanoid 00.000 Not matched by this tool.
76.880

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