DRSC/TRiP Functional Genomics Resources

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Protein Alignment Br140 and Kdm4A

DIOPT Version :9

Sequence 1:NP_001286155.1 Gene:Br140 / 35648 FlyBaseID:FBgn0033155 Length:1430 Species:Drosophila melanogaster
Sequence 2:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster


Alignment Length:141 Identity:29/141 - (20%)
Similarity:50/141 - (35%) Gaps:41/141 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1244 GKLRSATPNASPLVNNIKARRNTTAAGS---------APLTNNNRSKHSEDSAS-SERHNNHSHG 1298
            ||:.:|.|   |.:|..:.:.|..||.|         ..|..|...:::|.:.. .::.:..|:.
  Fly   353 GKICAAAP---PTLNEYEKQENLRAAKSEEESPQKRGCSLAGNGCERNAESAEDVDDKASVSSYS 414

  Fly  1299 QKPALEPLQLVWAKCRGYPWYPALILDPKTPKGFVYNGVPLPAPPTDVLALRKNCLDEIVFLVLF 1363
            ....|:|:    .|.|..|...::......||.:.:|        |:.:.               
  Fly   415 SCRQLQPV----VKLRKLPTIASVPEPSSAPKRYDFN--------TEAVV--------------- 452

  Fly  1364 FDVKRTWQWLP 1374
             .|||.|..||
  Fly   453 -RVKRLWNELP 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Br140NP_001286155.1 EPL1 <192..264 CDD:287484
PHD_BRPF 283..336 CDD:277047
ePHD_BRPF 340..456 CDD:277140
Bromo_brd1_like 615..712 CDD:99944
BR140_related 1303..1414 CDD:99900 15/72 (21%)
Kdm4ANP_610331.1 JmjN 17..59 CDD:301729
JmjC 182..298 CDD:202224
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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