DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Br140 and kdm4ab

DIOPT Version :9

Sequence 1:NP_001286155.1 Gene:Br140 / 35648 FlyBaseID:FBgn0033155 Length:1430 Species:Drosophila melanogaster
Sequence 2:XP_001339664.2 Gene:kdm4ab / 334347 ZFINID:ZDB-GENE-030131-6279 Length:1045 Species:Danio rerio


Alignment Length:528 Identity:124/528 - (23%)
Similarity:193/528 - (36%) Gaps:144/528 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 LTPSRKKARSRSGGHHSTPRPHKDHP-----------TPGGGGAE-ARN----GCSSASAGGGSA 107
            |||..::.:      ..|...|:|..           .||...|| :.|    |.|.|.....:.
Zfish   412 LTPYTEQCK------EYTELKHEDRTLPLMGSTSLKMLPGSRSAEFSENVRGAGFSDADLDAKAT 470

  Fly   108 SGVSARQYANPESLVSYNEEEATVTFNLDGKSVRLGIDDALPLVEDEE-FAALVARGCILNADAP 171
            |.:||.....|:..:|. ....||...|          .|:|.|..:. .|:|:....:...||.
Zfish   471 SHISACAQPFPKHHLSI-ASVPTVPHCL----------SAVPRVSTKPGVASLLFHRTLSPTDAL 524

  Fly   172 PLEENAPWARVQVPVARVAEIP--DYRVSD----------APP---------------------R 203
            .:...|..|.:..|.....|.|  |..:.|          .||                     :
Zfish   525 QVHSYAAKAALCKPQTPSPEKPREDLHIPDISLDVRPNTPTPPPDTPEHEIEGEKENNSMKRKLQ 589

  Fly   204 PLAYYRFIEKSLEE--LDGEVEYDV--DEEDSAW---LEHMNEERQRLGLNAVGIDTMELLMDRL 261
            ||:....:...|.|  .|.|::...  .||...|   |..|.:.|||              ..::
Zfish   590 PLSKLPRLHPLLRENSSDDEIQEPTAEPEETDPWAKILAPMWQSRQR--------------NFQI 640

  Fly   262 EKESHFQ----------------------------AAANGTPTGVEVDDDAVC-CICLDG----- 292
            |||.:|:                            ||..|.|...:.....:| ....:|     
Zfish   641 EKEFNFRMGLHPPYCAVCSLFHTYNESDVISLGGFAAVGGNPQRTKPLIPEMCFTSSSEGHLSTP 705

  Fly   293 --ECQNTNVILFCDMCNLAVHQDCYGVPYIPE-GQWLCRRCLQSPSKPVNCVLCPNAGGAFKQTD 354
              |...|:.::.|.:|::.||..||||....: ..|.|.|| ::.:...:|.||...|||.::.:
Zfish   706 NLEADGTSQLISCSVCSVRVHTSCYGVSQDAKLDSWRCSRC-EANAITQDCCLCSLRGGALQRAN 769

  Fly   355 HGQWAHVVCALWIPEVRFANTVFLEPIDSIETIPPARWRLTCYVCK---EKGLGACIQCHRNSCY 416
            :.:|.||:||:.:.|.||.|.....|:| :.|||..|::|.|..|:   :|..|.|:||....|.
Zfish   770 NDKWVHVLCAVAVLEARFVNIAERRPVD-LSTIPFQRFKLKCQFCRKWVKKTTGCCVQCSHGRCS 833

  Fly   417 AAFHVTCAQQAGLYMTMDTVKDGHNDSSMHVQKFAYCHAHTPADAKLKMNVPDFEDTRHKMKEAR 481
            .:||.||||.||:.|        |.|....|..|. |..| .....::.|:....:    :::.:
Zfish   834 TSFHATCAQAAGVQM--------HPDDWPFVVYFT-CWRH-KGGTHIERNMASMRE----LEKGQ 884

  Fly   482 KALAKKRS 489
            |.:.|.::
Zfish   885 KVICKHKN 892

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Br140NP_001286155.1 EPL1 <192..264 CDD:287484 20/111 (18%)
PHD_BRPF 283..336 CDD:277047 16/61 (26%)
ePHD_BRPF 340..456 CDD:277140 44/118 (37%)
Bromo_brd1_like 615..712 CDD:99944
BR140_related 1303..1414 CDD:99900
kdm4abXP_001339664.2 JmjN 10..52 CDD:128818
JmjC 172..288 CDD:202224
PHD_SF 654..746 CDD:304600 18/91 (20%)
ePHD_JMJD2A 755..864 CDD:277183 44/118 (37%)
TUDOR 879..932 CDD:197660 2/18 (11%)
TUDOR 936..991 CDD:197660
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

Return to query results.
Submit another query.