DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Br140 and Brd1

DIOPT Version :9

Sequence 1:NP_001286155.1 Gene:Br140 / 35648 FlyBaseID:FBgn0033155 Length:1430 Species:Drosophila melanogaster
Sequence 2:XP_006242256.1 Gene:Brd1 / 315210 RGDID:1311855 Length:1189 Species:Rattus norvegicus


Alignment Length:1435 Identity:505/1435 - (35%)
Similarity:691/1435 - (48%) Gaps:359/1435 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 RNG-CSSASAGGGSASGVSARQYANPESLVSYNEEEATVTFNLDGKSVRLGIDDALPLVEDEEFA 157
            |.| |...||....:|..|.:.....|:| :|.:.:..|...::|:..|:.|.|.|.::.:::..
  Rat     3 RKGRCHRGSAARHPSSPCSIKHSPTRETL-TYAQAQRMVEIEIEGRLHRISIFDPLEIILEDDLT 66

  Fly   158 ALVARGCIL---NADAPPL---------------------EENAPWARVQVPVARVAEIPDYRVS 198
            |.....|..   |::.||:                     ....|.:...:|..:| .|.:|...
  Rat    67 AQEMSECNSNKENSERPPVCLRTKRHKNNRVKKKNEVLPSTHGTPASASALPEPKV-RIVEYSPP 130

  Fly   199 DAPPRPLAYYRFIEKSLEELDGEVEYDVDEEDSAWLEHMNEERQRLGLNAVGIDTMELLMDRLEK 263
            .||.||..||:|||||.||||.|||||:||||.||||.:||:|:...::||..:..|.||||.||
  Rat   131 SAPRRPPVYYKFIEKSAEELDNEVEYDMDEEDYAWLEIINEKRKGDCVSAVSQNMFEFLMDRFEK 195

  Fly   264 ESHFQAAANGTPTGVEVDDDAVCCICLDGECQNTNVILFCDMCNLAVHQDCYGVPYIPEGQWLCR 328
            ||:.:....|....: :|:|||||||:||||||:|||||||||||||||:|||||||||||||||
  Rat   196 ESYCENQKQGEHQSL-IDEDAVCCICMDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCR 259

  Fly   329 RCLQSPSKPVNCVLCPNAGGAFKQTDHGQWAHVVCALWIPEVRFANTVFLEPIDSIETIPPARWR 393
            .||||.::|.:||||||.|||||:||..:|.|||||||||||.||||||:||||.:..||||||:
  Rat   260 HCLQSRARPADCVLCPNKGGAFKKTDDDRWGHVVCALWIPEVGFANTVFIEPIDGVRNIPPARWK 324

  Fly   394 LTCYVCKEKGLGACIQCHRNSCYAAFHVTCAQQAGLYMTMDTVKD-GHNDSSMHVQKFAYCHAHT 457
            ||||:||:||:|||||||:.:||.||||||||:|||||.|:.||: ....::..|:|.|||..||
  Rat   325 LTCYLCKQKGVGACIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGSTTFSVRKTAYCDVHT 389

  Fly   458 P-----------ADAKLKMNVPDFEDT----------RHKMKEARKALAKKRSTAPVVLIPTIPP 501
            |           .|.::|..|...|.:          |.|.|:|:||||:..:..|.|..|.|||
  Rat   390 PPGCTRRPLNIYGDVEMKNGVCRKESSVKTVRSTSKVRKKAKKAKKALAEPCAVLPTVCAPYIPP 454

  Fly   502 DRVQEIATMVTMQRKKEFLDRIIAYWTLKRHYRNGVPLLRRLQSQGNNHGVIQRNGIEGSPDTGE 566
            .|:..||..|.:||||:|::|..:||.|||..|||.||||||||...:....|:.  |...:...
  Rat   455 QRLNRIANQVAIQRKKQFVERAHSYWLLKRLSRNGAPLLRRLQSSLQSQRNTQQR--ENDEEMKA 517

  Fly   567 LYRQLKYWQCLRQDLERARLLCELVRKREKLKVAFVRISEEVVMLQLNPLEAALNKLLDALEARD 631
            ...:|||||.||.||||||||.||:|||||||...|::.:..:.|:|.||...|..:|:.|:.:|
  Rat   518 AKEKLKYWQRLRHDLERARLLIELLRKREKLKREQVKVEQMAMELRLTPLTVLLRSVLEQLQEKD 582

  Fly   632 SMQIFREPVDTSEVPDYTDIVKQPMDLGTMRAKLKECQYNSLEQLEADFDLMIQNCLAYNNKDTV 696
            ..:||.:||...|||||.|.:|.|||..|||.:|:...|.:|...|.||:|::.||:.||.||||
  Rat   583 PAKIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHAFEEDFNLIVDNCMKYNAKDTV 647

  Fly   697 FYRAGIRMRDQAAPLFVQVRKEL----------------------------QRDGLLARSQRYHV 733
            ||||.:|:|||...:..|.|:|:                            :.|.||..:.|.|:
  Rat   648 FYRAAVRLRDQGGVVLRQARREVDSIGLEEASGMHLPERPIAAPRRPFSWEEVDRLLDPANRAHM 712

  Fly   734 DHVEAEVEQELRLLLAAPASEGIVQKLLILADKSQVLKNPTYRTKKIKQIRLEISRMRKSLQKAR 798
                 .:|::||.||         .||    |.:..:|:...|:|:.|.::.||:.:|..|.:  
  Rat   713 -----SLEEQLRELL---------DKL----DLTCSMKSSGSRSKRAKLLKKEIALLRNKLSQ-- 757

  Fly   799 FAARHSSHANQSQSDDEDTLGGSPSKKRTRKRFNSSGVDMELGHDDD------DEEEDSDEDSMG 857
                        |.....::|....                 |.:||      |..|:.|:    
  Rat   758 ------------QHSQTPSIGAGTG-----------------GFEDDAAPLAPDTGEEGDK---- 789

  Fly   858 EDTVSKDLLNSTQTPPCSPIKSLNNSSSPVGINRRTAILLTRKAQAALKRPSEPLT-TPVKEEQH 921
                        ..|...|..:|...|.|                   :..|||.| .||  |.:
  Rat   790 ------------SPPKLEPSDALPLPSDP-------------------ETNSEPPTLKPV--ELN 821

  Fly   922 NSQSSNTQSTSGSSSSVTTAATAASSGAGTLNHVLSSAPPTASSFALTQNNSSGGGALASGTGIG 986
            ..||...:..:..:.|.:|...:|         ::|..||..:              |||     
  Rat   822 PEQSKLFKRVTFDNESHSTCTQSA---------LVSGHPPEPT--------------LAS----- 858

  Fly   987 GSSSAGTAAAASLTSTALAMNSKLSANLPVKSPKRPGRYRRVPEVRHSSSMSPKKSPNPAVT--- 1048
             |.....|||:::...:..:|.:.|. |..|                |.|:||.||.....|   
  Rat   859 -SGDVPAAAASAVAEPSSDVNRRTSV-LFCK----------------SKSVSPPKSAKNTETQPT 905

  Fly  1049 ---------VSQALPMPETL--PFERIPDSFRVYRANNQRDVSDSDDAPSQSSSPCSSCSDFSMS 1102
                     :|..||..|||  |.:|                       |:|             
  Rat   906 SPQLGTKTFLSVVLPRLETLLQPRKR-----------------------SRS------------- 934

  Fly  1103 GSCSDFDSDEASEGD-ADGDPDRDGGRSRSEERDSTSQEGTTDAMDMQHASLNNVQGNNGNMAIS 1166
             :|.|.:.:|.|.|. .|.......|.:|||: :..|..|...|...:.||.:::..:|..:..|
  Rat   935 -TCGDSEVEEESPGKRLDTGLTNGFGGTRSEQ-EPGSGPGRKAAPRRRCASESSICSSNSPLCDS 997

  Fly  1167 SSSGGSGGSSSEDDELEERPLSARQNKPMKVGTRGTPTPTTMARAVALSAGRGRGKRRSNLSEST 1231
            |.|                                  ||..           ||||         
  Rat   998 SFS----------------------------------TPKC-----------GRGK--------- 1008

  Fly  1232 SSTATPPPLRRAGKLRSATPNASPLVNNIKARRNTTAAGSAPLTNNNRSKHSEDSASSERHNNHS 1296
                  |.|.|    |....:.|.|::.|:......||..|.....|....|.|:|:|       
  Rat  1009 ------PALVR----RHTLEDRSELISCIENGNYAKAARIAAEVGQNSMWISTDAAAS------- 1056

  Fly  1297 HGQKPALEPLQLVWAKCRGYPWYPALILDPKTPK--GFVYNGVPLPAPPTDVLALRKNC---LDE 1356
                 .||||::|||||.|||.|||||:|||.|:  |. :|||.:||||.|||.:.::.   .:|
  Rat  1057 -----VLEPLKVVWAKCSGYPSYPALIIDPKMPRVPGH-HNGVTIPAPPLDVLKIGEHMQTKSEE 1115

  Fly  1357 IVFLVLFFDVKRTWQWLPANKLDILGIDKQLDQQKLVESRKPAERKAVKKAYQDALHYQSQV--- 1418
            .:|||||||.||:|||||.:|:..||:|:.:|:.|::|.|..:.||||:.|:..|:::.|:|   
  Rat  1116 KLFLVLFFDNKRSWQWLPKSKMVPLGVDETIDKLKMMEGRNSSIRKAVRIAFDRAMNHLSRVHGE 1180

  Fly  1419 --SDL 1421
              |||
  Rat  1181 PASDL 1185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Br140NP_001286155.1 EPL1 <192..264 CDD:287484 41/71 (58%)
PHD_BRPF 283..336 CDD:277047 47/52 (90%)
ePHD_BRPF 340..456 CDD:277140 79/116 (68%)
Bromo_brd1_like 615..712 CDD:99944 46/96 (48%)
BR140_related 1303..1414 CDD:99900 61/115 (53%)
Brd1XP_006242256.1 EPL1 47..196 CDD:287484 53/149 (36%)
PHD_BRPF2 214..267 CDD:277147 47/52 (90%)
ePHD_BRPF2 271..388 CDD:277172 79/116 (68%)
Bromo_brd1_like 566..663 CDD:99944 46/96 (48%)
BR140_related 1058..1173 CDD:99900 61/115 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I2966
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 734 1.000 Inparanoid score I576
OMA 1 1.010 - - QHG47059
OrthoDB 1 1.010 - - D566217at2759
OrthoFinder 1 1.000 - - FOG0001002
OrthoInspector 1 1.000 - - otm45807
orthoMCL 1 0.900 - - OOG6_102102
Panther 1 1.100 - - O PTHR13793
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X459
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.840

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