DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Br140 and Jade2

DIOPT Version :9

Sequence 1:NP_001286155.1 Gene:Br140 / 35648 FlyBaseID:FBgn0033155 Length:1430 Species:Drosophila melanogaster
Sequence 2:XP_038941852.1 Gene:Jade2 / 303113 RGDID:1309152 Length:901 Species:Rattus norvegicus


Alignment Length:1160 Identity:276/1160 - (23%)
Similarity:395/1160 - (34%) Gaps:418/1160 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 PQPLTP----------VLTPSRKKARSR----SGGHHSTPRPHKDHPTPGG-------GGAEARN 95
            |:|..|          :..|:...||||    ||||.....| .:|.:|.|       ||.|...
  Rat     4 PRPPAPAPGAPGFRSILPAPAPAAARSRGQRPSGGHRGARAP-GEHTSPPGPPVPSSLGGLELAE 67

  Fly    96 ---------------GCSSASAGGGSASGVSARQYAN-PESLVS----YNEEEATVTFNLDGKSV 140
                           ...::....|..:..||.:.:. |.|..|    .||::.:..|..| ...
  Rat    68 QSTKQMEEKRRKYSISSDNSDTTDGHVTSTSASRCSKLPSSTKSGWPRQNEKKPSEVFRTD-LIT 131

  Fly   141 RLGIDDALPLVEDEEFAALVARGCILNADAPPLEENAPWAR-----VQVPVARVAEIPDYRVSDA 200
            .:.|.|:..|..|:.:         :.||        ||.:     ||||....| ||:..|...
  Rat   132 AMKIPDSYQLSPDDYY---------ILAD--------PWRQEWEKGVQVPAGAEA-IPEPVVRIL 178

  Fly   201 PP-----------RPLAYYRFIEKSLEELDGEVEYDVDEEDSAWLEHMNEERQRLGLNAVGIDTM 254
            ||           .|    ...|.:..:..|...||:||.|:.|||.:|.|.:.:....:...|:
  Rat   179 PPLKGPPTLMSPESP----TLGEGAHPDWPGGSRYDLDEIDAYWLELLNSELKEMEKPELDELTL 239

  Fly   255 ELLMDRLEKESH---FQAAANGTPTGVEVDDDAVCCICLDGECQNTNVILFCDMCNLAVHQDCYG 316
            |.:::.||...|   .||.......|:|.|:|.||.:|...|.::.|.::|||.||:.|||.|||
  Rat   240 ERVLEELETLCHQNMAQAIETQEGLGIEYDEDVVCDVCRSPEGEDGNEMVFCDKCNVCVHQACYG 304

  Fly   317 VPYIPEGQWLCRRCLQSPSKPVNCVLCPNAGGAFKQTDHG-QWAHVVCALWIPEVRFANTVFLEP 380
            :..:|.|.||||.|......  .|:|||..|||.|.|..| :|.||.||||||||.......:||
  Rat   305 ILKVPTGSWLCRTCALGVQP--KCLLCPKRGGALKPTRSGTKWVHVSCALWIPEVSIGCPEKMEP 367

  Fly   381 IDSIETIPPARWRLTCYVCKEKGLGACIQCHRNSCYAAFHVTCAQQAGLYMTMDTVKDGHNDSSM 445
            |..|..||.:||.|:|.:||| ..|.||||...||..|||||||...||  .|.|:. ..||   
  Rat   368 ITKISHIPASRWALSCSLCKE-CTGTCIQCSTPSCLTAFHVTCAFDRGL--EMRTIL-ADND--- 425

  Fly   446 HVQKFAYCHAHTPADAKLKMNVPDFEDTRHKMKEARKALAKKRSTAPVV--LIPTIPPDRVQEIA 508
            .|:..:.|..|:....:.:.:....|.:: .:::..|...:|:....:.  ....:.|..|.|  
  Rat   426 EVKFKSLCQEHSDGGPRSEPSSEPVEPSQ-AVEDLEKVTLRKQRLQQLEENFYELVEPAEVAE-- 487

  Fly   509 TMVTMQRKKEFLDRIIAYWTLKRHYRNGVPLLRRLQSQGNNHGVIQRNGIEGSPDTGE------- 566
               .:...:..:|.|..||.|||......|||                    :|.|.|       
  Rat   488 ---RLDLAEALVDFIYQYWKLKRRANANQPLL--------------------TPKTDEVDNLAQQ 529

  Fly   567 ----LYRQLKYWQCLRQDLERARLLCELVRKREKLKVAFVRISEEVVMLQLNPLEAALNKLLDAL 627
                |||:||.:..|||||||.|.||.:|.:||:.|....::.|::..||:              
  Rat   530 EQDVLYRRLKLFTHLRQDLERVRNLCYMVTRRERTKHTICKLQEQIFHLQM-------------- 580

  Fly   628 EARDSMQIFREPVDTSEVPDYTDIVKQPMDLGTMRAKLKECQYNSLEQLEADFDLMIQNCLAYNN 692
                                                ||                           
  Rat   581 ------------------------------------KL--------------------------- 582

  Fly   693 KDTVFYRAGIRMRDQAAPLFVQVRKELQRDGLLARSQRYHVDHVEAEVEQELRLLLAAPASEGIV 757
                                                           :||:|             
  Rat   583 -----------------------------------------------IEQDL------------- 587

  Fly   758 QKLLILADKSQVLKNPTYRTKKIKQIRLEISRMRKSLQKARFAARHSSHANQSQSDDEDTLGGSP 822
                        .:.|:.|..|.|:        ..|.:|.|                |...|.||
  Rat   588 ------------CREPSGRRSKGKK--------NDSKRKGR----------------EGPKGSSP 616

  Fly   823 SKKRTRKR---------------------FNS--------SGVDMEL-------GHDDD------ 845
            .||...|.                     |||        :..||.:       ||.:|      
  Rat   617 EKKEKMKAGPESVLGQLGLSTSFPIDGTFFNSWLAQSVQITAEDMAMSEWSLNSGHREDPAPGLL 681

  Fly   846 DEEEDSDEDSMGEDTVSKDLLNSTQTPPCSPIKSLNNSSSPVGINRRTAILLTRKAQAALKRPSE 910
            .||...||::         ||:..:.|...|       ..|           .|||:...:.|::
  Rat   682 SEELLQDEET---------LLSFMRDPSLRP-------GDP-----------ARKARGRTRLPAK 719

  Fly   911 PLTTPVKEEQHNSQSSNTQSTSGSSSSVTTAATA----ASSGAGTLNHVLSSAPPTASSFALTQN 971
            ....|:::              |.|:..|....|    |..|.||.... :..||..:|..|..:
  Rat   720 KKPPPLQD--------------GPSARTTPEKPAKKAWAQDGKGTQGPP-ARKPPRRTSSHLPSS 769

  Fly   972 NSSGGGALASGTGIGGSSSAGTAAAASLTSTALAMNSKLSANL--PVKSPKRPGRYRRVPEVRHS 1034
            .::|...:.:..     .|..|.|:..|..|..|. |.|:..:  |..|||..||.|...|::.|
  Rat   770 PAAGDCPVPATL-----ESPPTLASEILDETVPAA-SDLNVQVPGPTVSPKPLGRLRPPREMKVS 828

  Fly  1035 SSMSPKKSPNPAVTVSQALP-----MPE-TLPFERIPDSFRVYRANNQRDVSDSD 1083
                 :|||.........||     .|: :|.|:...|.:     .:..::||||
  Rat   829 -----RKSPGARSDAGTGLPSTVAERPKVSLHFDTEADGY-----FSDEEMSDSD 873

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Br140NP_001286155.1 EPL1 <192..264 CDD:287484 22/82 (27%)
PHD_BRPF 283..336 CDD:277047 24/52 (46%)
ePHD_BRPF 340..456 CDD:277140 56/116 (48%)
Bromo_brd1_like 615..712 CDD:99944 2/96 (2%)
BR140_related 1303..1414 CDD:99900
Jade2XP_038941852.1 EPL1 82..247 CDD:402235 43/187 (23%)
COG5141 209..>578 CDD:227470 140/403 (35%)
PHD_SF 326..436 CDD:419867 56/116 (48%)
PHA03247 <676..852 CDD:223021 50/228 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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