DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Br140 and KDM4C

DIOPT Version :9

Sequence 1:NP_001286155.1 Gene:Br140 / 35648 FlyBaseID:FBgn0033155 Length:1430 Species:Drosophila melanogaster
Sequence 2:NP_001340926.1 Gene:KDM4C / 23081 HGNCID:17071 Length:1089 Species:Homo sapiens


Alignment Length:635 Identity:149/635 - (23%)
Similarity:223/635 - (35%) Gaps:224/635 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 QYHLMK-----YDHDNPQPLTPVLTPS-----------RKKARSRSGGHHSTPRPHKDH------ 83
            :|.|.|     |..|:.:| ||..||.           ||.:||......::.||..|.      
Human   330 RYQLWKQGKDIYTIDHTKP-TPASTPEVKAWLQRRRKVRKASRSFQCARSTSKRPKADEEEEVSD 393

  Fly    84 -------PTPGG------------GGAEARNGCSSASAGGGSASGVSARQYANPESLVSYNEEEA 129
                   |.|..            ...:.|| ..::|....|||.:...|..:....:|.|...:
Human   394 EVDGAEVPNPDSVTDDLKVSEKSEAAVKLRN-TEASSEEESSASRMQVEQNLSDHIKLSGNSCLS 457

  Fly   130 T-VTFNL---DGK--------SVRLGIDDALPL-----------------VEDEEFAALVA--RG 163
            | ||.::   |.|        |:....||::||                 .:..|..:.||  .|
Human   458 TSVTEDIKTEDDKAYAYRSVPSISSEADDSIPLSSGYEKPEKSDPSELSWPKSPESCSSVAESNG 522

  Fly   164 CILNADAPPLEENA----PWARVQVP--------VARVAEIPD-------YRVSDAPPR-PLAYY 208
            .:...:...:|.:.    |.....||        |..:||..:       :.:|..|.| |:...
Human   523 VLTEGEESDVESHGNGLEPGEIPAVPSGERNSFKVPSIAEGENKTSKSWRHPLSRPPARSPMTLV 587

  Fly   209 R-------------FIEKSLEELD------------------GEVEYDV---------------- 226
            :             .||:.:||.:                  .|.||:.                
Human   588 KQQAPSDEELPEVLSIEEEVEETESWAKPLIHLWQTKSPNFAAEQEYNATVARMKPHCAICTLLM 652

  Fly   227 ---------DEEDSAWLEHMNEERQRLGLNAVGIDTMELLMDRLEKESHF---QAAANGTPTGVE 279
                     :|.|:.|...::|           :.|.|.....|..|..|   :.....:|....
Human   653 PYHKPDSSNEENDARWETKLDE-----------VVTSEGKTKPLIPEMCFIYSEENIEYSPPNAF 706

  Fly   280 VDDDAVCCICLDGECQNTNVILFCDMCNLAVHQDCYGVP--YIPEGQWLCRRCLQSPSKPVNCVL 342
            :::|            .|::::.|..|.:.||..|||:|  .|.:| |||.||.:: :....|.|
Human   707 LEED------------GTSLLISCAKCCVRVHASCYGIPSHEICDG-WLCARCKRN-AWTAECCL 757

  Fly   343 CPNAGGAFKQTDHGQWAHVVCALWIPEVRFANTVFLEPIDSIETIPPARWRLTCYVCK---EKGL 404
            |...|||.|||.:.:||||:||:.:|||||.|......|| :..||..|.:|.|..|:   ::..
Human   758 CNLRGGALKQTKNNKWAHVMCAVAVPEVRFTNVPERTQID-VGRIPLQRLKLKCIFCRHRVKRVS 821

  Fly   405 GACIQCHRNSCYAAFHVTCAQQAGLYMTMD--------------------TVKDGH--NDSSMHV 447
            ||||||....|.|:||||||..||:.|..|                    |.:..|  |:|    
Human   822 GACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHKVNPNVFTAQSKHSKNES---- 882

  Fly   448 QKFAYCHAHTPADAKLKMNVPDFEDTRHKMKEARKALA-------KKRST 490
                 |.|.|.:.|.....:  ..:..||.|...|.::       |.|:|
Human   883 -----CIATTTSAAAAGATI--LCELGHKSKACEKVISVGQTVITKHRNT 925

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Br140NP_001286155.1 EPL1 <192..264 CDD:287484 18/135 (13%)
PHD_BRPF 283..336 CDD:277047 17/54 (31%)
ePHD_BRPF 340..456 CDD:277140 52/140 (37%)
Bromo_brd1_like 615..712 CDD:99944
BR140_related 1303..1414 CDD:99900
KDM4CNP_001340926.1 JmjN 16..57 CDD:326657
JmjC 177..293 CDD:202224
PHD_JMJD2C 644..746 CDD:277052 25/125 (20%)
ePHD_JMJD2C 755..864 CDD:277185 47/109 (43%)
TUDOR 912..966 CDD:197660 3/14 (21%)
TUDOR 968..1023 CDD:197660
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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