DRSC/TRiP Functional Genomics Resources

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Protein Alignment Br140 and Kdm4a

DIOPT Version :9

Sequence 1:NP_001286155.1 Gene:Br140 / 35648 FlyBaseID:FBgn0033155 Length:1430 Species:Drosophila melanogaster
Sequence 2:NP_001155295.1 Gene:Kdm4a / 230674 MGIID:2446210 Length:1064 Species:Mus musculus


Alignment Length:491 Identity:119/491 - (24%)
Similarity:179/491 - (36%) Gaps:138/491 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 VLTPSRKKARSRSGGHHSTPRPHKDHPTPGGGGAEARNGCSSASAGGGSASGV-SARQYANPESL 121
            |.:.|:||:.|..|...|......|..|           ..|.|..|...:|| :...||..:..
Mouse   500 VFSGSKKKSSSSLGSTSSQDSVSSDSET-----------AESVSCQGQEKTGVLTVHSYARGDGK 553

  Fly   122 VSYNEEEATVTFNLDGKSVRLGIDDALPLVEDEEFAALVARGCILNADAPPLEENAPWARVQVPV 186
            .:..|...        |..|     :.|....|:..|.||...:|:     ||||......:.|:
Mouse   554 AATGEPSV--------KKKR-----SAPRSISEQELAEVADEYMLS-----LEENKKTKGRRQPL 600

  Fly   187 ARVAEIPDYRVSDAPPRPLAYYRFIEKSLEELDGEVEYDVDEEDSAWLEHMNEERQRLGLNAVGI 251
            ::   :|.:.     |..|......:::.|:|..|.|   .||..||.:.:::..|....|    
Mouse   601 SK---LPRHH-----PLVLQECGSDDETSEQLTPEEE---AEETEAWAKPLSQLWQNRPPN---- 650

  Fly   252 DTMELLMDRLEKESHF-QAAANGTPTGVEVDDDAVCCI---------------CLDG-------- 292
                     .|.|..| :..|...|      ..|||.|               |.|.        
Mouse   651 ---------FEAEKEFNEIMAQQAP------HCAVCMIFQTYHQVEFGAFSQSCGDASEPAAQTQ 700

  Fly   293 ---------------------------ECQNTNVILFCDMCNLAVHQDCYGVPYIPEG-QWLCRR 329
                                       |...|::::.|..|::.||..|||||..... :|:|.|
Mouse   701 RTKPLIPEMCFTTTGCSTDINLSTPYLEEDGTSMLVSCKKCSVRVHASCYGVPPAKASEEWMCSR 765

  Fly   330 CLQSPSKPVNCVLCPNAGGAFKQTDHGQWAHVVCALWIPEVRFANTVFLEPIDSIETIPPARWRL 394
            | .:.:...:|.||...|||.::.:..:|.||.||:.|.|.||.|.....|:| :..||..|::|
Mouse   766 C-SANALEEDCCLCSLRGGALQRANDDRWVHVSCAVAILEARFVNIAERSPVD-VSKIPLPRFKL 828

  Fly   395 TCYVCK---EKGLGACIQCHRNSCYAAFHVTCAQQAGLYMTMDTVKDGHNDSSMHVQKFAYCHAH 456
            .|..||   ::..|.|:||....|..||||:|||.||:.|..|       |....|  |..|..|
Mouse   829 KCVFCKKRRKRNAGCCVQCSHGRCPTAFHVSCAQAAGVMMQPD-------DWPFVV--FITCFRH 884

  Fly   457 TPADAKLKMNVPDFEDTRH---KMKEARKALAKKRS 489
                     .:|:.|..:.   .:...:|.::|.::
Mouse   885 ---------KIPNLERAKGALLSITAGQKVISKHKN 911

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Br140NP_001286155.1 EPL1 <192..264 CDD:287484 14/71 (20%)
PHD_BRPF 283..336 CDD:277047 21/103 (20%)
ePHD_BRPF 340..456 CDD:277140 45/118 (38%)
Bromo_brd1_like 615..712 CDD:99944
BR140_related 1303..1414 CDD:99900
Kdm4aNP_001155295.1 JmjN 13..55 CDD:128818
JmjC 175..291 CDD:334913
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 354..384
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 434..489
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 502..537 11/45 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 549..573 4/36 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 590..643 13/63 (21%)
Interaction with NCOR1. /evidence=ECO:0000250 597..638 12/51 (24%)
PHD_SF 667..766 CDD:389947 19/98 (19%)
ePHD_JMJD2A 775..884 CDD:277183 45/118 (38%)
Tudor_2 902..936 CDD:375553 2/10 (20%)
Tudor_2 960..994 CDD:375553
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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