DRSC/TRiP Functional Genomics Resources

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Protein Alignment Br140 and jmjd-2

DIOPT Version :9

Sequence 1:NP_001286155.1 Gene:Br140 / 35648 FlyBaseID:FBgn0033155 Length:1430 Species:Drosophila melanogaster
Sequence 2:NP_496969.2 Gene:jmjd-2 / 175080 WormBaseID:WBGene00012982 Length:922 Species:Caenorhabditis elegans


Alignment Length:291 Identity:68/291 - (23%)
Similarity:94/291 - (32%) Gaps:109/291 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   300 ILFCDMCNLAVHQDC----------------YGVPYIPEGQWLCRRCLQSPS---KPVNCVLCPN 345
            :|.|..|::.||..|                .|.|      |.|.||.....   :..:|.||..
 Worm   589 LLTCSNCHVTVHSHCCSGGGGGGGDDDDVTSSGEP------WRCPRC
RNRTDVEIRTTSCQLCEL 647

  Fly   346 AGGAFKQTDHG---QWAHVVCALWIPEVRF-----ANTVFLEPI--DSIET--IPP--------- 389
            .|||......|   .||||.|||:.....|     ....|:||.  ...||  :||         
 Worm   648 RGGALIPCQIGTDSTWAHVACALFNRRAIFDCPNRPGACFVEPSPRQQSETPRMPPRRLSEEYRA 712

  Fly   390 --------ARWRLTCYVC--KEKGLGACIQCHRNSCYAAF----HVTCAQQAGLYMTMDTVKDGH 440
                    :||.  |.||  .::||..|:.|.......:.    |||||::.|.   :..|:|..
 Worm   713 ELGDLYENSRWE--CVVCHRTDEGLAPCVLCIEEQATTSLPTLAHVTCARRVGF---VCEVRDYP 772

  Fly   441 NDSSMHVQKFAYCHAH---------TPADAKLKMNVPDFEDTRHKMKEARKALAKKRSTAPVVLI 496
            ....|      .||.|         |...|...:.|.||                       |.:
 Worm   773 RGVVM------ICHKHEHSYLVNKTTQQQAYTNVKVGDF-----------------------VFV 808

  Fly   497 PTI--PPDRVQEIATMVTMQRKK----EFLD 521
            ..:  ||.::.....:|...:|:    :|||
 Worm   809 EDVVEPPQKLFTRGAIVRADKKETVVVDFLD 839

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Br140NP_001286155.1 EPL1 <192..264 CDD:287484
PHD_BRPF 283..336 CDD:277047 12/54 (22%)
ePHD_BRPF 340..456 CDD:277140 42/150 (28%)
Bromo_brd1_like 615..712 CDD:99944
BR140_related 1303..1414 CDD:99900
jmjd-2NP_496969.2 JmjN 86..129 CDD:128818
JmjC 252..371 CDD:202224
PHD_SF 536..603 CDD:304600 5/13 (38%)
PHD_SF 588..629 CDD:304600 10/45 (22%)
ePHD 642..782 CDD:277046 42/150 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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