DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Br140 and brd1b

DIOPT Version :9

Sequence 1:NP_001286155.1 Gene:Br140 / 35648 FlyBaseID:FBgn0033155 Length:1430 Species:Drosophila melanogaster
Sequence 2:XP_005163199.1 Gene:brd1b / 100009661 ZFINID:ZDB-GENE-070209-98 Length:1168 Species:Danio rerio


Alignment Length:1398 Identity:468/1398 - (33%)
Similarity:653/1398 - (46%) Gaps:351/1398 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 NPESLVSYNEEEATVTFNLDGKSVRLGIDDALPLVEDEEFAALVARGC----------------- 164
            |.|:| :|.|.:..|...:||:..||.|.|.|.:::.::..|.....|                 
Zfish    25 NRETL-TYAEAQRMVELEIDGRVHRLSIYDKLDVIDSDDPLAQEISECTSNKENTEKPQQVLVRS 88

  Fly   165 -------------ILNADAPPLEENAPWARVQVPVARVAEIPDYRVSDAPPRPLAYYRFIEKSLE 216
                         :.|....|.:     .|:..|..|:.|   |.:...|.||..||.::||:|:
Zfish    89 VRLKNNQQKKSAALTNVQGSPAQ-----GRLPEPKIRMVE---YNLPAVPRRPSVYYTYMEKTLD 145

  Fly   217 ELDGEVEYDVDEEDSAWLEHMNEERQRLGLNAVGIDTMELLMDRLEKESHFQAAANGTPTGVEVD 281
            |||.|||||:||||.||||.|||:|:..|.:.|..:..|.||||.||||.|.:.|.|.|..: :|
Zfish   146 ELDEEVEYDMDEEDYAWLEMMNEKRKSDGHSQVSQNVFEFLMDRFEKESFFDSQAQGEPQSL-ID 209

  Fly   282 DDAVCCICLDGECQNTNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLQSPSKPVNCVLCPNA 346
            :|||||||:||||||:|.|||||||||||||:|||||:||||:||||.||.|||:...|:.|||.
Zfish   210 EDAVCCICMDGECQNSNAILFCDMCNLAVHQECYGVPHIPEGRWLCRHCLNSPSQLAECIFCPNK 274

  Fly   347 GGAFKQTDHGQWAHVVCALWIPEVRFANTVFLEPIDSIETIPPARWRLTCYVCKEKGLGACIQCH 411
            |||.|:||..:|.|||||:|:|||.|.||:|:||||.:..||||||:||||:||:||:||||||.
Zfish   275 GGALKRTDDDRWGHVVCAIWVPEVGFTNTLFIEPIDGVANIPPARWKLTCYLCKKKGVGACIQCS 339

  Fly   412 RNSCYAAFHVTCAQQAGLYMTMDTVKD--GHNDSSMHVQKFAYCHAHTP-----------ADAKL 463
            :.:||.||||:|||:|||||.|:.||:  ....::..|:|.|||..|||           .|:|.
Zfish   340 KANCYTAFHVSCAQKAGLYMKMEPVKEVTESGGTTFSVKKTAYCCPHTPNGFVRRPLTIYDDSKS 404

  Fly   464 KMNVPDFEDTRHKMKEARKALAKKRSTAPVVLIPT-----IPPDRVQEIATMVTMQRKKEFLDRI 523
            |..|......|.::|..:|...||..:.|..::||     |.|.....|...|::|:|:.|::|:
Zfish   405 KNGVCQKAAHRERVKGCQKKKNKKPESEPDTVVPTVSGPSITPKSFNTILNQVSVQKKRMFVERV 469

  Fly   524 IAYWTLKRHYRNGVPLLRRLQSQGNNHGVIQRNGIEGSP---DTGELYRQLKYWQCLRQDLERAR 585
            ::||.|||..||||||:||||:     .:..:...|..|   |...|..|||....||.||||||
Zfish   470 LSYWMLKRQSRNGVPLIRRLQT-----AIQTQKDPEDDPCVDDHQTLTDQLKDLHRLRHDLERAR 529

  Fly   586 LLCELVRKREKLKVAFVRISEEVVMLQLNPLEAALNKLLDALEARDSMQIFREPVDTSEVPDYTD 650
            ||.||:|||||||...:::.:.|:.:||.|....|...||.|:.:|..:||.:||..:|||||.|
Zfish   530 LLLELIRKREKLKREEMKLQQSVLEMQLTPFPIILRVALDQLQEKDQAKIFAQPVSVTEVPDYLD 594

  Fly   651 IVKQPMDLGTMRAKLKECQYNSLEQLEADFDLMIQNCLAYNNKDTVFYRAGIRMRDQAAPLFVQV 715
            .:|.|||..|||.::...:|.||::.|.||:|:|.|||.||.|||.|||||:||||....:..:.
Zfish   595 HIKHPMDFSTMRKRIDGHEYQSLDEFEEDFNLIINNCLKYNAKDTYFYRAGVRMRDHGGVILRRT 659

  Fly   716 RKELQRDGL---------------LARSQRYH-VDHV-----EAEVEQELRLLLAAPASEGIVQK 759
            |:|.:|.|.               |..|..:| ||.|     .|.:.::.:|           :|
Zfish   660 RRETERIGFEFPSGIHLPEPPKLELPPSFTWHDVDRVLNPANRAHMSKDEQL-----------KK 713

  Fly   760 LLILADKSQVLKNPTYRTKKIKQIRLEISRMRKSL-QKARFAARHSSHANQSQSDDEDTLGGSPS 823
            ||.:.|.:..:|:...|:|::|.::..|..:|..: ||..                      .||
Zfish   714 LLEMLDLTFAMKSCPSRSKRLKLLKKTIGDVRMDMGQKTE----------------------PPS 756

  Fly   824 KKRTRKRFNSSGVDMELGHDDDDEEEDS----DEDSMGEDTVSKDLLNSTQTPPCSPIKSLNNSS 884
                            |..::..|||.:    .::..|:.::...|      .|...:..|.||.
Zfish   757 ----------------LEQNNTKEEEKAPLILPQEEEGDKSLPPKL------EPSDSVPLLKNSD 799

  Fly   885 SPVGINRRTAILLTRKAQAALKRPSEPLTTPVKEEQHNSQSSNTQSTSGSSSSVTTAATAASSGA 949
            ||              .:....:|.||  :|.|..:.......|.|||                 
Zfish   800 SP--------------CEPPTLKPMEP--SPEKCPKKVKFDGETFSTS----------------- 831

  Fly   950 GTLNHVLSSAPPTASSFALTQNNSSGGGALASGTGIGGSSSAGTAAAASLTSTALAMNSKLSANL 1014
             .||.:.....|       ::||.                   ..|.::||..|..:|.:.:...
Zfish   832 -LLNGLSPDVLP-------SENNV-------------------MVATSTLTEPANIVNRRTAVLF 869

  Fly  1015 PVKSPKRPGRYRRVPEVRHSSSMSPKKSPN---PAVT---------VSQALPMPETLPFERIPDS 1067
                             |.|.:.||:|..|   |::.         :|..:|..|||...|    
Zfish   870 -----------------RKSKNTSPQKLLNTSEPSIDCPQLGTKTFLSVVIPRLETLLQHR---- 913

  Fly  1068 FRVYRANNQRDVSDSDDAPSQSSSPCSSCSDFSMSGSCSDFDSDEASEGDADGDPDRDGGRSRSE 1132
                    :|..|.|.|:|.:.........|..:|...|     |..:|.....|.....|..||
Zfish   914 --------KRTHSASGDSPDEEDECPIKRLDTGLSNGFS-----EPKKGIIVTRPSEPRRRCASE 965

  Fly  1133 ERDSTSQEGTTDAMDMQHASLNNVQGNNGNMAISSSSGGSGGSSSEDDELEERPLSARQNKPMKV 1197
            ...|:|..|             ::|.|:.:  :|.:..|.|           :...||:|     
Zfish   966 SSISSSGSG-------------SIQENSSD--VSHTKSGKG-----------KLAMARRN----- 999

  Fly  1198 GTRGTPTPTTMARAVALSAGRGRGKRRSNLSESTSSTATPPPLRRAGKLRSATPNASPLVNNIKA 1262
                    ||..:           |...|.:|       |..:.:|.||.:...:     :||..
Zfish  1000 --------TTDDK-----------KELLNCTE-------PGNISKANKLAAEIDS-----SNIWM 1033

  Fly  1263 RRNTTAAGSAPLTNNNRSKHSEDSASSERHNNHSHGQKPALEPLQLVWAKCRGYPWYPALILDPK 1327
            ..|||     ||.                           ||||::||||..|||.|||||:||:
Zfish  1034 PANTT-----PLN---------------------------LEPLKVVWAKLSGYPSYPALIIDPQ 1066

  Fly  1328 TPK-GFVYNGVPLPAPPTDVL---ALRKNCLDEIVFLVLFFDVKRTWQWLPANKLDILGIDKQLD 1388
            .|: |...|...:|.||.|||   .|.:....|.:|||.|||.||.|||||.:|:...|:||.||
Zfish  1067 LPRVGCHLNEEYIPTPPRDVLRVGELMQFRSKEKLFLVRFFDSKRNWQWLPKSKMVPFGMDKTLD 1131

  Fly  1389 QQKLVESRKPAERKAVKKAYQDALHYQSQVSDL 1421
            ::|::|.|....||||:.|:..|:::.|.|.||
Zfish  1132 KRKMLEGRTSGIRKAVQSAFNRAMNHLSLVQDL 1164

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Br140NP_001286155.1 EPL1 <192..264 CDD:287484 37/71 (52%)
PHD_BRPF 283..336 CDD:277047 44/52 (85%)
ePHD_BRPF 340..456 CDD:277140 70/117 (60%)
Bromo_brd1_like 615..712 CDD:99944 48/96 (50%)
BR140_related 1303..1414 CDD:99900 57/114 (50%)
brd1bXP_005163199.1 EPL1 45..193 CDD:287484 50/155 (32%)
PHD_BRPF2 211..264 CDD:277147 44/52 (85%)
PHD_SF 268..386 CDD:304600 70/117 (60%)
Bromo_brd1_like 559..656 CDD:99944 48/96 (50%)
PWWP 1042..1157 CDD:295359 57/114 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 196 1.000 Domainoid score I3073
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 730 1.000 Inparanoid score I599
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D566217at2759
OrthoFinder 1 1.000 - - FOG0001002
OrthoInspector 1 1.000 - - otm25045
orthoMCL 1 0.900 - - OOG6_102102
Panther 1 1.100 - - O PTHR13793
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1726
SonicParanoid 1 1.000 - - X459
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.860

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