DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn43Ad and srp-6

DIOPT Version :9

Sequence 1:NP_610261.1 Gene:Spn43Ad / 35639 FlyBaseID:FBgn0044011 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_504890.1 Gene:srp-6 / 179125 WormBaseID:WBGene00005647 Length:375 Species:Caenorhabditis elegans


Alignment Length:378 Identity:95/378 - (25%)
Similarity:160/378 - (42%) Gaps:31/378 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 SSNRFGLRLTTKLGLTQPDANVVVSPLLIQAALSLLYAESSSEYGSQLRQALELTHASHPKLAVQ 99
            |...|||.|..:..||:   :.|.|||.|..||||::..:..|...::|:|| |..|:..:|. |
 Worm    16 SETDFGLSLLRQQNLTE---SFVFSPLSIALALSLVHVAAKGETRDEIRKAL-LNGATDEELE-Q 75

  Fly   100 DFETLLTDLKQSAAIGCRLRLLSDLYAQQRFTFN--FRNEFETLAARMGVGCHRLSWESASNAAQ 162
            .|..:...| ..|..|..:.:.:.:::::.||..  :.|:.:.|   ...|..:|::|....:|:
 Worm    76 HFSNISAGL-LVAEKGTEVNVANHIFSRKTFTIKKLYLNDVKKL---YNAGASQLNFEDQEASAE 136

  Fly   163 DINYAFLSRSNFSLGELVSAPQLESLAEHNTPFLHVSGVTFRAPWAWAFDPTETQSINFFAGGNR 227
            .|| .|:|.:  :.|.:......:|::|.....| .:...|:|.|...|....|....||:..|.
 Worm   137 AIN-NFVSEN--TKGHIKKIINPDSISEELVAVL-TNAFYFKANWQTKFKKESTYKREFFSSENS 197

  Fly   228 PRLVDAMFGQHRYR-YAEVPALDAQLIEVPFATADLRMLIVFPNRPDGLAQLERKLAQSDLHQLR 291
            .|..:.:..::..| |:|....  |::.:|:......:.|..|....||::..:.|....:.||.
 Worm   198 KRETEFLHSRNSNRKYSENGQF--QVLSLPYKDTSFALSIFLPKTRFGLSEALQNLDSVTIQQLM 260

  Fly   292 SQLEERKVALTLPKLRVLVHSDLKHVLEELGLAKLFTSEVHLSEVFSSILSSSAPPLGAVVQSGL 356
            |......|.:.:||.::.....|...|..:|:.|.||....||.....|..|.|      ....|
 Worm   261 SNTSNTLVNIAMPKWKIETALGLNRALMAVGIEKAFTDSADLSNFADGIYISQA------AHKAL 319

  Fly   357 LELQEDGGNA----DDSFSFGDLF---RRALPLVINHPFFYAIGNGKTLLLSG 402
            :|:.|||..|    ..|||...:|   ...:....:|||.:.:......|..|
 Worm   320 IEVDEDGTVAAAATTISFSLTSVFIPAEEPIEFTADHPFLFILSKDNHPLFIG 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn43AdNP_610261.1 SERPIN 35..404 CDD:238101 95/378 (25%)
srp-6NP_504890.1 serpinL_nematode 16..374 CDD:381047 95/378 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 1 1.000 - - FOG0000050
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.020

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