DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spn43Ad and srp-3

DIOPT Version :10

Sequence 1:NP_610261.1 Gene:Spn43Ad / 35639 FlyBaseID:FBgn0044011 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_503528.2 Gene:srp-3 / 178672 WormBaseID:WBGene00005644 Length:362 Species:Caenorhabditis elegans


Alignment Length:388 Identity:81/388 - (20%)
Similarity:150/388 - (38%) Gaps:55/388 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 VSSNRFGLRLTTKLGLTQPDANVVVSPLLIQAALSLLYAESSSEYGSQLRQALELTHASHPKLAV 98
            |:..||.|.....|.:  .:.::|.|||.|...|||::.........|:|..| |:.|:..:| |
 Worm     4 VAERRFALNFLNTLPV--HNESLVFSPLSIALVLSLVHTGVRGSSRDQIRNTL-LSGATDEQL-V 64

  Fly    99 QDFETLLTDLKQSAAIGCRLRLLSDLYAQQRFTFNFRNEFETLAARMGVGCHRLSWESASNAAQD 163
            :.|..:..::|.... |..:.|.:.:|.::.||.| .....|.....|.....|...:.: |.|:
 Worm    65 EHFSFVSKEVKNGTK-GVEVYLANKVYLKKGFTVN-PTFLSTALKNYGADAKSLDLTTPA-AVQE 126

  Fly   164 INYAFLSRSNFSLGELVSAPQL-ESLAEHNTPFLHVSGVTFRAPWAWAFDPTETQSINFFAGGNR 227
            ||....:.:|..:..:.:...: :::|      |.::.:.|:|.|...||.......:|......
 Worm   127 INSFVNTATNGKIKNIATQDSIKDAIA------LLINSIYFKADWDDKFDGMSVSEQDFTLHTGE 185

  Fly   228 PRLVDAM--FGQHRYRYAEVPALDAQLIEVPFATADLRMLIVFPNRPDGLAQLERKLAQSDLHQL 290
            .:.:..|  |...| .::.....|  ::.|.::....:..:..|...:.|.:..:||.:...:.|
 Worm   186 KKKIKFMKEFMNDR-SFSSDDVFD--VLHVAYSDQRYQFSVFLPKLRNSLKEALKKLNEKRFNDL 247

  Fly   291 RSQLEERKVALTLPKLRVLVHSDLKHVLEELGLAKLFTSEVHLSEVFSSILSSSAPPLGAVVQSG 355
            ....:...:...|||..:....:||..|:.||:..:|:....||.:..::..|..      |...
 Worm   248 LKTKKRTFMNTQLPKFTIEKDLNLKSHLQTLGITDIFSDSADLSGLAENLKISEG------VHKA 306

  Fly   356 LLELQEDGGN-----------------------ADDSFSFGDLFRRALPLVINHPFFYAIGNG 395
            ::|:.|:|..                       ||..|.|...|       :|||.|..:.||
 Worm   307 IIEVNEEGTTAAAVTMMKAVPMSARMEQPVNFIADHPFFFTITF-------LNHPIFVGVFNG 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn43AdNP_610261.1 serpin42Dd-like_insects 34..407 CDD:381070 81/388 (21%)
srp-3NP_503528.2 serpinL_nematode 5..360 CDD:381047 78/383 (20%)

Return to query results.
Submit another query.