DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Er and TM4SF

DIOPT Version :9

Sequence 1:NP_523644.1 Gene:Tsp42Er / 35629 FlyBaseID:FBgn0033139 Length:211 Species:Drosophila melanogaster
Sequence 2:NP_001261159.1 Gene:TM4SF / 37786 FlyBaseID:FBgn0020372 Length:292 Species:Drosophila melanogaster


Alignment Length:197 Identity:43/197 - (21%)
Similarity:79/197 - (40%) Gaps:38/197 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 RYLAFLFNFLCAVLGIATIVV------------NVIAIDQIAPKDQLILGLYIAVGSIVFLLSFF 61
            :||.:.:..|.|:.|.|.|.:            .::.....||     ..:.:.:|.:.|:|.:.
  Fly    11 KYLVYSYVVLLALTGAAQIFLGTSLLWGHSVYYGIVQNKLWAP-----AAILLCLGPVTFILCWM 70

  Fly    62 GCFGAIKESICVTWAYATSMLVMLIVSIVML---FVFRMH-------FEEDSITKLKQAFAK-QT 115
            ||....:...|:...:|..::..:.|..::.   ...|.:       |.:||..:....|:: :.
  Fly    71 GCQATNQRKRCLLGMFAALLVACICVQFIICGWSLAMRENLPTSVEIFIDDSFVEFLDKFSRTKV 135

  Fly   116 NTFDAMAEYQTQYQCCGIYKLKDYGDAYITVPSSC-------YDQN-DTPYRDGCLAKMETQYEE 172
            :........|:|.||||:....||  ..:::|.||       |:.. ||.|:.||||.:..|...
  Fly   136 DNLHLWNRMQSQLQCCGVDGPLDY--RRLSLPWSCCSRPEHAYESACDTHYKRGCLAVVSEQIRN 198

  Fly   173 LL 174
            .|
  Fly   199 RL 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42ErNP_523644.1 Tetraspannin 8..195 CDD:278750 43/197 (22%)
tetraspanin_LEL 93..174 CDD:239401 25/96 (26%)
TM4SFNP_001261159.1 Tetraspannin 9..224 CDD:278750 43/197 (22%)
uroplakin_I_like_LEL 111..197 CDD:239409 24/87 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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