DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp42Er and tsp-6

DIOPT Version :9

Sequence 1:NP_523644.1 Gene:Tsp42Er / 35629 FlyBaseID:FBgn0033139 Length:211 Species:Drosophila melanogaster
Sequence 2:NP_001294830.1 Gene:tsp-6 / 13219712 WormBaseID:WBGene00006632 Length:237 Species:Caenorhabditis elegans


Alignment Length:221 Identity:65/221 - (29%)
Similarity:102/221 - (46%) Gaps:34/221 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 IRYLAFLFNFLCAVLGIATIV------------VNVIA------IDQIAPK---DQLILGLYIA- 50
            ::|..:|.|||..||| |.||            :|.:|      :.||..:   .||...||:| 
 Worm    10 VKYFFWLINFLFFVLG-AIIVGLSIWMLVDKNSLNTVASTVKVDLSQILSQVNIQQLNSFLYVAI 73

  Fly    51 -VGSIVFLLSFFGCFGAIKESICVTWAYATSMLVML---IVSIVMLFVFRMHFEEDSITKLKQAF 111
             :|..:.:|.||||.|:..||||....|...:|::.   :|:||:.||.:.:.::...|..:...
 Worm    74 VIGGALLVLGFFGCCGSCCESICAISIYFILVLILFVVEVVAIVLYFVNKTNLQQGFQTIWRDEL 138

  Fly   112 AKQTNT----FDAMAEYQTQYQCCGIYKLKDYGDAYITVPSSCYDQNDTPYRDGCLAKMETQYEE 172
            ..:.||    ...:.:.|:..||||.....|| ..|...|:||  |..|..:.||...:...:|.
 Worm   139 VSKYNTQQQIHQVLDQIQSSLQCCGASGCSDY-IPYGAFPTSC--QCATIQQAGCATVIWNSFES 200

  Fly   173 LLKGPKIVGWMLMVIEIGAFTFSTIM 198
            .|.....||.:::.:|:.|..||.|:
 Worm   201 SLIYVAFVGIIILFVELLAMIFSCII 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42ErNP_523644.1 Tetraspannin 8..195 CDD:278750 62/216 (29%)
tetraspanin_LEL 93..174 CDD:239401 21/84 (25%)
tsp-6NP_001294830.1 Tetraspannin 9..227 CDD:278750 65/221 (29%)
tetraspanin_LEL 120..202 CDD:239401 21/84 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.