DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Eq and tspan4a

DIOPT Version :9

Sequence 1:NP_523643.2 Gene:Tsp42Eq / 35628 FlyBaseID:FBgn0033138 Length:219 Species:Drosophila melanogaster
Sequence 2:XP_009292176.1 Gene:tspan4a / 436620 ZFINID:ZDB-GENE-040718-38 Length:321 Species:Danio rerio


Alignment Length:248 Identity:48/248 - (19%)
Similarity:94/248 - (37%) Gaps:64/248 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 FVLDFLCCVLAALTIAACSYALIAFS------------------------HSVAIRVPSI----L 49
            |:|:...|.:|...:.|..|.::.|:                        .:::..:||:    |
Zfish    74 FLLELRRCRMAEGCLRALRYGMVFFNLLFWLCGCGILGVGVWLSITQGNFATLSSSLPSLSAANL 138

  Fly    50 GIVLGGLLFFSTIFGCIAALRESIRMTWIYAAILLALVFSQITVILAQPINY----ELLANETIY 110
            .|..|.::......||:.|::|: |...:...|||.|:|....:.:....:|    :|.|...:.
Zfish   139 LIAAGTVVMVIGCLGCVGAVKEN-RPLLLSFFILLLLIFLLEILFIILFFSYQDQIDLYAQNDLK 202

  Fly   111 DAWQ-----GQLYHSDRMSYFEIKYHCCGQTGPANYPDSGLV-----IPQSCYFNQNATVTTDLY 165
            ...|     |.:..::..|..:..:.|||.|   |:.|...|     :|.||...         |
Zfish   203 KGLQLFGTEGNIGLTNAWSIVQTDFRCCGVT---NHTDWFQVYNTSRVPDSCCLE---------Y 255

  Fly   166 TVGCNHQLAAAFVKGTRWEKITDW---SVVGVEI------LTVIIAGLLAITL 209
            :..|..:....:.....:|::..|   ::|.:.|      ||.|:..:.::|:
Zfish   256 SDNCGLENPGTWWTAPCYERVKGWLQENLVALWIFALCTALTQILGLVFSMTI 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EqNP_523643.2 Tetraspannin 8..209 CDD:278750 47/246 (19%)
tetraspanin_LEL 95..173 CDD:239401 18/91 (20%)
tspan4aXP_009292176.1 Tetraspannin 91..311 CDD:278750 43/231 (19%)
NET-5_like_LEL 189..284 CDD:239418 20/106 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19282
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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