DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp42Eq and cd63

DIOPT Version :9

Sequence 1:NP_523643.2 Gene:Tsp42Eq / 35628 FlyBaseID:FBgn0033138 Length:219 Species:Drosophila melanogaster
Sequence 2:NP_955837.1 Gene:cd63 / 321461 ZFINID:ZDB-GENE-030131-180 Length:237 Species:Danio rerio


Alignment Length:251 Identity:62/251 - (24%)
Similarity:102/251 - (40%) Gaps:67/251 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 GTKALKVSSFVLDFL--CCVLAALTIAACSYALIAFSHSVAI-----RVPSILGIVLGGLLFFST 61
            |.|.:|...|..:|:  .|.||.:.:....:..:   |:.||     ..|.:| ||:|.::||.:
Zfish     6 GAKCVKYLLFFFNFIFWLCGLALIVLGILVHVSL---HNTAILQGASGSPMVL-IVVGVIIFFIS 66

  Fly    62 IFGCIAALRESIRMTWIYAAILLALVFSQI-------------TVILAQPINYELLAN------- 106
            .|||..|.:|:..|...:|.||..:|.::|             ..:|.|..| .::|.       
Zfish    67 FFGCCGAWKENQCMVVTFAIILSLIVITEIGAGIAGYIFRGKVNELLDQSFN-TMIAGYNKTEEY 130

  Fly   107 ETIYDAWQGQLYHSDRMSYFEIKYHCCGQTGPA---NYPDSGLVIPQSCYFN--QNA-----TVT 161
            .|..|:.|.||             .|||....:   |:....:.:|.||..|  :|.     |..
Zfish   131 RTTLDSIQKQL-------------KCCGGNSSSDWVNFSADHISVPDSCCKNVTKNCGIGAMTKP 182

  Fly   162 TDLYTVGCNHQLAAAFVKGTRWEKITDWSVVG------VEILTVIIAGLLAITLQN 211
            |.:|..||...|.      ||.::...|..||      |:|..:::|.:|:..:::
Zfish   183 TVIYLEGCQPILE------TRIKENILWIAVGALVIGFVQITGIVLACILSRAIRS 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EqNP_523643.2 Tetraspannin 8..209 CDD:278750 60/243 (25%)
tetraspanin_LEL 95..173 CDD:239401 23/94 (24%)
cd63NP_955837.1 Tetraspannin 9..230 CDD:278750 60/244 (25%)
CD63_LEL 103..202 CDD:239419 26/118 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.