DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgant3 and galnt1

DIOPT Version :9

Sequence 1:NP_610256.1 Gene:Pgant3 / 35627 FlyBaseID:FBgn0027558 Length:667 Species:Drosophila melanogaster
Sequence 2:XP_031759269.1 Gene:galnt1 / 594943 XenbaseID:XB-GENE-1013398 Length:559 Species:Xenopus tropicalis


Alignment Length:587 Identity:252/587 - (42%)
Similarity:348/587 - (59%) Gaps:91/587 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 DDYNINLFQPINGEGADGRPVVVPPRDRFRMQRFFRLNSFNLLASDRIPLNRTLKDYRTPECRDK 143
            |..:||. :|..|.|..|:|||:|..::.:|:..|::|.|||:||:.|.|||:|.|.|...|:.|
 Frog    46 DGPDINQ-KPHEGPGEMGKPVVIPKEEQEKMKEMFKINQFNLMASEMIALNRSLPDVRLEGCKTK 109

  Fly   144 KYASGLPSTSVIIVFHNEAWSVLLRTITSVINRSPRHLLKEIILVDDASDRSYLKRQLESYVKVL 208
            .|...||:|||:||||||||:.||||:.|||||||||||:|||||||||:|.:|||.||:|||.|
 Frog   110 VYPDSLPTTSVVIVFHNEAWTTLLRTVHSVINRSPRHLLQEIILVDDASEREFLKRPLETYVKKL 174

  Fly   209 AVPTRIFRMKKRSGLVPARLLGAENARGDVLTFLDAHCECSRGWLEPLLSRIKESRKVVICPVID 273
            .||..:.||::||||:.|||.||..::|.|:|||||||||:.|||||||:|||..|:.|:||:||
 Frog   175 TVPVHVLRMEQRSGLIRARLRGAAASKGQVITFLDAHCECTVGWLEPLLARIKHDRRTVVCPIID 239

  Fly   274 IISDDNFSYTKTFENHWGAFNWQLSFRWF-----SSDRKRQTAGNSSKDSTDPIATPGMAGGLFA 333
            :||||.|.|....:..:|.|||:|:|||:     ..||:|       .|.|.|:.||.||||||:
 Frog   240 VISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRR-------GDRTLPVRTPTMAGGLFS 297

  Fly   334 IDRKYFYEMGSYDSNMRVWGGENVEMSFRIWQCGGRVEISPCSHVGHVFRSSTPYTFPGGMSEVL 398
            |||.||.|:|:||:.|.:|||||:|:|||||||||.:||..|||||||||.:||||||||..:::
 Frog   298 IDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQII 362

  Fly   399 TDNLARAATVWMDDWQYFIMLYTSGLTLGAKDKVNVTERVALRERLQCKPFSWYLENIWPEHFFP 463
            ..|..|.|.||||:::.|..:.:.|:|  ..|..:::.||.||.:||||||||||||::|:...|
 Frog   363 NKNNRRLAEVWMDEFKNFFYIISPGVT--KVDYGDISTRVGLRHKLQCKPFSWYLENVYPDSQIP 425

  Fly   464 APDRFFGKIIWLDGETECAQAYSKHMKNLPGRALSREWKRAFEEIDSKAEELMALIDLERDKCLR 528
                                   :|..:|.                       .:.::|.::|| 
 Frog   426 -----------------------RHYYSLG-----------------------EIRNVETNQCL- 443

  Fly   529 PLKEDVPRSSLSAVTVGDCTSHAQ-SMDMFVITPKGQIMTNDNVCLTYRQQKL-GVIKMLKNRNA 591
               :::.|.....|.:.:|  |.. ...:|..|...:|.| |::||..  .|| |.:.|||..:.
 Frog   444 ---DNMARKENEKVGIFNC--HGMGGNQVFSYTASKEIRT-DDLCLDV--SKLNGPVIMLKCHHL 500

  Fly   592 TTSNVMLAQCASDSSQLWTYDMDTQQISHRDTKLCLTLKAATNSRLQKVEKVVLSMECDFKDITQ 656
            .            .:|||.||.....:.|.::..||...|..:|::..:.      :|. ...:|
 Frog   501 R------------GNQLWEYDPVKLTLVHVNSNQCLDKAAEEDSQVPSIR------DCS-GSRSQ 546

  Fly   657 KW 658
            :|
 Frog   547 QW 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgant3NP_610256.1 Glyco_tranf_2_3 150..386 CDD:290369 150/240 (63%)
pp-GalNAc-T 153..457 CDD:133004 183/308 (59%)
Ricin_B_lectin 516..658 CDD:279046 32/143 (22%)
RICIN 524..660 CDD:238092 32/137 (23%)
galnt1XP_031759269.1 pp-GalNAc-T 119..419 CDD:133004 183/308 (59%)
Ricin_B_lectin 432..548 CDD:395527 32/166 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D194016at33208
OrthoFinder 1 1.000 - - FOG0002015
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11675
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.110

Return to query results.
Submit another query.