DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgant3 and galnt6.3

DIOPT Version :9

Sequence 1:NP_610256.1 Gene:Pgant3 / 35627 FlyBaseID:FBgn0027558 Length:667 Species:Drosophila melanogaster
Sequence 2:XP_004911960.1 Gene:galnt6.3 / 100498043 XenbaseID:XB-GENE-22063205 Length:622 Species:Xenopus tropicalis


Alignment Length:598 Identity:229/598 - (38%)
Similarity:316/598 - (52%) Gaps:106/598 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 QPINGEGADGRPVVVPPRDRF------RMQRFFRLNSFNLLASDRIPLNRTL-KDYRTPECRDKK 144
            |..|..||||:..   .:|.:      ..::.|..:.||..|||||.|:|.| .|.|.|.|.::|
 Frog   106 QDPNSPGADGKGF---KKDTWTEEETKEKEKGFDKHCFNAFASDRISLHRALGPDTRPPVCIEQK 167

  Fly   145 Y--ASGLPSTSVIIVFHNEAWSVLLRTITSVINRSPRHLLKEIILVDDASDRSYLKRQLESYVKV 207
            :  ...||:|||||||||||||.||||:.||:..||..||||||||||||:..|||.:|:.|||.
 Frog   168 FKRCPSLPTTSVIIVFHNEAWSTLLRTVYSVLYTSPAILLKEIILVDDASEDEYLKEKLDDYVKA 232

  Fly   208 LAVPTRIFRMKKRSGLVPARLLGAENARGDVLTFLDAHCECSRGWLEPLLSRIKESRKVVICPVI 272
            |.: .:|.|.|:|.||:.||||||..|.|:|||||||||||..||||||||||.|....|:.|.|
 Frog   233 LQI-VKIARQKERKGLITARLLGASIATGEVLTFLDAHCECFHGWLEPLLSRIAEDHTAVVSPDI 296

  Fly   273 DIISDDNFSYTKTFE----NHWGAFNWQLSFRWF---SSDRKRQTAGNSSKDSTDPIATPGMAGG 330
            ..|..::|.:.|..:    :..|.|:|.|:|.|.   :::::|:      ||.|.||.:|..|||
 Frog   297 TTIDLNSFEFAKPVQYGKTHSRGNFDWSLTFGWEAIPAAEKERR------KDETYPIKSPTFAGG 355

  Fly   331 LFAIDRKYFYEMGSYDSNMRVWGGENVEMSFRIWQCGGRVEISPCSHVGHVFRSSTPYTFPGGMS 395
            ||:|.:.||..:||||..|.:|||||||||||:|||||::||.|||.||||||:.:|:|||.| :
 Frog   356 LFSISKAYFEHIGSYDEEMEIWGGENVEMSFRVWQCGGQLEIIPCSVVGHVFRTKSPHTFPKG-T 419

  Fly   396 EVLTDNLARAATVWMDDWQ--YFIMLYTSGLTLGAKDKVNVTERVALRERLQCKPFSWYLENIWP 458
            :|::.|..|.|.|||||::  |:.....:...:..|...::::|:.|:..||||.|:||||||:|
 Frog   420 QVISRNQVRLAEVWMDDYKLIYYRRNEQAAKMVREKSFGDISKRLKLKADLQCKNFTWYLENIYP 484

  Fly   459 EHFFPAPDRFFGKIIWLDGETECAQAYSKHMKNLPGRAL------SREWKRAFEEIDSKAEELMA 517
            |.|.|..|..:...:..:|...|.....   .|..|:.|      .....:.||.  |..:||..
 Frog   485 EMFVPDRDPTYYGAVKNEGSQNCLDVGE---NNHGGKPLIMYPCHGMGGNQYFEY--STHKELRH 544

  Fly   518 LIDLERDKCLRPLKEDVPRSSLSAVTVGDCTSHAQSMDMFVITPKGQIMTNDNVCLTYRQQKLGV 582
              ::.:..|||......|      |.:|:|                          .|:.:|..|
 Frog   545 --NIAKQLCLRSKYGPGP------VELGEC--------------------------QYKGKKTTV 575

  Fly   583 IKMLKNRNATTSNVMLAQCASDSSQLWTYDMDTQQISHRDTKLCLTLKAATNSRLQKVEKVVLSM 647
                                 ..::.|....| :.:.:..:.:|||.:....|          :.
 Frog   576 ---------------------PGNEEWELTKD-RLLKNVGSNMCLTARGENPS----------TA 608

  Fly   648 ECDFKDITQKWGF 660
            ||:..||.|:|||
 Frog   609 ECNPSDIHQRWGF 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgant3NP_610256.1 Glyco_tranf_2_3 150..386 CDD:290369 137/242 (57%)
pp-GalNAc-T 153..457 CDD:133004 163/312 (52%)
Ricin_B_lectin 516..658 CDD:279046 21/141 (15%)
RICIN 524..660 CDD:238092 22/135 (16%)
galnt6.3XP_004911960.1 pp-GalNAc-T 178..483 CDD:133004 163/312 (52%)
Ricin_B_lectin 496..619 CDD:366226 31/193 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D606683at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.