DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Ep and Prph2

DIOPT Version :10

Sequence 1:NP_523642.1 Gene:Tsp42Ep / 35626 FlyBaseID:FBgn0033137 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_032964.1 Gene:Prph2 / 19133 MGIID:102791 Length:346 Species:Mus musculus


Alignment Length:280 Identity:55/280 - (19%)
Similarity:93/280 - (33%) Gaps:102/280 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LSNLLYMLLGIGVMSGAGLGLQM-----AEPNTPEHTYFVKSLVLGGSICMIVMFGCYGMVA--- 70
            |.|.|.:|.|| |:...||.|::     :|......::||.:.::|..:...|.....|.:.   
Mouse    22 LMNWLSVLAGI-VLFSLGLFLKIELRKRSEVMNNSESHFVPNSLIGVGVLSCVFNSLAGKICYDA 85

  Fly    71 --------------NLLCVNLIFTMFI-LIALAAEYLQ--------------LHHYHSPSLRSPG 106
                          ..|.|.:.|.:.: |:||....|:              :.:|....  :||
Mouse    86 LDPAKYAKWKPWLKPYLAVCIFFNVILFLVALCCFLLRGSLESTLAYGLKNGMKYYRDTD--TPG 148

  Fly   107 GAWQQLELAWHGLDRDPELMHQYEASQHCCGYNGADDYKRLHLL--------------------- 150
            ..:.:..:.          |.|.|..  |||.||..|:..:..:                     
Mouse   149 RCFMKKTID----------MLQIEFK--CCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVD 201

  Fly   151 -------VPASCYQAAVNDTAQQIYPSGCL--ETLNRSQRY-IQHR-DKLYMWAIVGLEIFIL-- 202
                   ||.||    .|.::    |..|:  :..|.|..| ..|: ::|.:| :.|....:|  
Mouse   202 GRYLVDGVPFSC----CNPSS----PRPCIQYQLTNNSAHYSYDHQTEELNLW-LRGCRAALLNY 257

  Fly   203 -------LQTVALSVLLFRL 215
                   :..|.|.|.||.:
Mouse   258 YSSLMNSMGVVTLLVWLFEV 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EpNP_523642.1 Tetraspanin 23..213 CDD:459767 49/267 (18%)
tetraspanin_LEL 91..183 CDD:239401 23/136 (17%)
Prph2NP_032964.1 Tetraspanin 16..181 CDD:459767 35/173 (20%)
peripherin_like_LEL 120..262 CDD:239415 28/164 (17%)
Interaction with MREG. /evidence=ECO:0000269|PubMed:17260955 341..346
Blue background indicates that the domain is not in the aligned region.

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