DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbm and Tspan11

DIOPT Version :10

Sequence 1:NP_523639.1 Gene:lbm / 35623 FlyBaseID:FBgn0016032 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_081019.1 Gene:Tspan11 / 68498 MGIID:1915748 Length:253 Species:Mus musculus


Alignment Length:224 Identity:56/224 - (25%)
Similarity:92/224 - (41%) Gaps:55/224 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GCATTSVKIASIVLNAVLGFLAAGAIGWIAYNADTETEEFVIAAYIAC---SLILVFALLGIFAA 63
            |.|..:|.|.::|..:  |:|:..|           :..|..:|||..   .|::....||..|.
Mouse    31 GAAVMAVGIWTLVEKS--GYLSILA-----------SSTFAASAYILIFVGGLVMTTGFLGFGAI 82

  Fly    64 IRESVVLTATSAVFLLILAILQIVSTCLFLHEFDVKSGRDMVEVAWQAN---------------- 112
            |||.....:|....||::.::::|:..| .|   |...|...|:.|..|                
Mouse    83 IREQKSCLSTYFCLLLVIFLVELVAGVL-AH---VYYQRLSDELKWHLNSTLTEHYGQPRAAEIT 143

  Fly   113 -NMDSLQQKHECCGQSSAQDYIH---------LSLLIPPSCYADL------QQTPDHLYL--DGC 159
             ::|.|||..:|||.:|:.|:.|         |...:|.||...:      :..|.::|.  .||
Mouse   144 ASVDRLQQDFKCCGSNSSADWQHSAYILSQEALGRQVPDSCCKTVVARCGQRAHPSNIYKVEGGC 208

  Fly   160 IEKVQSFYESDKLRFIIVSWVLVAFELIC 188
            :.|::.|. :|.|..:....:.||...||
Mouse   209 MAKLEQFV-ADHLLLMGAVGIGVACLQIC 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbmNP_523639.1 Tetraspanin <47..196 CDD:459767 45/179 (25%)
tetraspanin_LEL <109..169 CDD:239401 22/93 (24%)
Tspan11NP_081019.1 Tetraspanin 16..244 CDD:459767 56/224 (25%)
CD151_like_LEL 112..220 CDD:239408 27/111 (24%)

Return to query results.
Submit another query.