DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbm and tspan33a

DIOPT Version :10

Sequence 1:NP_523639.1 Gene:lbm / 35623 FlyBaseID:FBgn0016032 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_001002617.2 Gene:tspan33a / 436890 ZFINID:ZDB-GENE-040718-361 Length:281 Species:Danio rerio


Alignment Length:226 Identity:45/226 - (19%)
Similarity:82/226 - (36%) Gaps:69/226 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VKIASIVLNAVLGFLAAGAIGWIAYNADTETEEFVIAAYIACSLILV--------FALLGIFAAI 64
            ||......|.:...::...|....|:...:.|..:....:..:|||:        ....|...::
Zfish    21 VKYLLFFFNMIFWIISLVLISIGVYSRIVKHETALACLTVDPALILMVVGILMFFITFCGCVGSL 85

  Fly    65 RESVVLTATSAVFLLILAILQIVSTCL-FLHE----------FD--VKSGRDMVEVAWQANNMDS 116
            ||::.|..|..:||.|:.:||:::..| |:..          ||  :|..||.:::   .|.:|.
Zfish    86 RENICLLQTFCIFLTIMFLLQLLAGVLGFVFSDKARGKVTDMFDNAIKHYRDDLDL---QNLIDY 147

  Fly   117 LQQKHECCGQSSAQD-----YIHLS--------LLIPPSCYADLQQ------------------- 149
            .|::..|||..|..|     |.:.|        ..:|.||....::                   
Zfish   148 GQKQFNCCGGISFMDWSKNMYFNCSDDNPSRERCSVPFSCCLHAKEETIINTMCGHGMQALNYLA 212

  Fly   150 TPDHLYLDGCIEKVQSFYESDKLRFIIVSWV 180
            ....:..:|||:             |:|:|:
Zfish   213 ASAFINTNGCID-------------ILVNWI 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbmNP_523639.1 Tetraspanin <47..196 CDD:459767 39/187 (21%)
tetraspanin_LEL <109..169 CDD:239401 16/91 (18%)
tspan33aNP_001002617.2 Tetraspanin 21..260 CDD:459767 45/226 (20%)
penumbra_like_LEL 114..234 CDD:239411 25/133 (19%)

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