DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbm and Tsp42Er

DIOPT Version :9

Sequence 1:NP_001260757.1 Gene:lbm / 35623 FlyBaseID:FBgn0016032 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_523644.1 Gene:Tsp42Er / 35629 FlyBaseID:FBgn0033139 Length:211 Species:Drosophila melanogaster


Alignment Length:216 Identity:63/216 - (29%)
Similarity:111/216 - (51%) Gaps:13/216 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGCATTSVKIASIVLN---AVLGFLAAGAIGWIAYNADTETEEFVIAAYIAC-SLILVFALLGIF 61
            ||.:...::..:.:.|   |||| :|...:..||.:.....::.::..|||. |::.:.:..|.|
  Fly     1 MGWSPLMIRYLAFLFNFLCAVLG-IATIVVNVIAIDQIAPKDQLILGLYIAVGSIVFLLSFFGCF 64

  Fly    62 AAIRESVVLTATSAVFLLILAILQIVSTCLFLHEFDVKSGRDMVEV-AWQANNMDSL---QQKHE 122
            .||:||:.:|...|..:|::.|:.||...:|...|:..|...:.:. |.|.|..|::   |.:::
  Fly    65 GAIKESICVTWAYATSMLVMLIVSIVMLFVFRMHFEEDSITKLKQAFAKQTNTFDAMAEYQTQYQ 129

  Fly   123 CCGQSSAQDYIHLSLLIPPSCYADLQQTPDHLYLDGCIEKVQSFYESDKLRFIIVSWVLVAFELI 187
            |||....:||....:.:|.||| |...||   |.|||:.|:::.||.......||.|:|:..|:.
  Fly   130 CCGIYKLKDYGDAYITVPSSCY-DQNDTP---YRDGCLAKMETQYEELLKGPKIVGWMLMVIEIG 190

  Fly   188 CFALAVFLAISFKNKQRRMEF 208
            .|..:..:.:|.:|:.||..:
  Fly   191 AFTFSTIMGVSLRNELRRSAY 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbmNP_001260757.1 Tetraspannin 8..198 CDD:278750 57/197 (29%)
tetraspanin_LEL <109..169 CDD:239401 22/62 (35%)
Tsp42ErNP_523644.1 Tetraspannin 8..195 CDD:278750 57/191 (30%)
tetraspanin_LEL 93..174 CDD:239401 27/84 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467706
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001737
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.840

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