DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbm and Tsp42Eq

DIOPT Version :9

Sequence 1:NP_001260757.1 Gene:lbm / 35623 FlyBaseID:FBgn0016032 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_523643.2 Gene:Tsp42Eq / 35628 FlyBaseID:FBgn0033138 Length:219 Species:Drosophila melanogaster


Alignment Length:216 Identity:60/216 - (27%)
Similarity:99/216 - (45%) Gaps:12/216 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGCATTSVKIASIVLN---AVLGFLAAGAIGW--IAYNADTETEEFVIAAYIACSLILVFALLGI 60
            |.|.|.::|::|.||:   .||..|...|..:  ||::.........|...:...|:....:.|.
  Fly     1 MSCGTKALKVSSFVLDFLCCVLAALTIAACSYALIAFSHSVAIRVPSILGIVLGGLLFFSTIFGC 65

  Fly    61 FAAIRESVVLTATSAVFLLILAILQIVSTCLFLHEFDVKSGRDMVEVAWQ-----ANNMDSLQQK 120
            .||:|||:.:|...|..||.|...||.........:::.:...:.: |||     ::.|...:.|
  Fly    66 IAALRESIRMTWIYAAILLALVFSQITVILAQPINYELLANETIYD-AWQGQLYHSDRMSYFEIK 129

  Fly   121 HECCGQSSAQDYIHLSLLIPPSCYADLQQT-PDHLYLDGCIEKVQSFYESDKLRFIIVSWVLVAF 184
            :.||||:...:|....|:||.|||.:...| ...||..||..::.:.:........|..|.:|..
  Fly   130 YHCCGQTGPANYPDSGLVIPQSCYFNQNATVTTDLYTVGCNHQLAAAFVKGTRWEKITDWSVVGV 194

  Fly   185 ELICFALAVFLAISFKNKQRR 205
            |::...:|..|||:.:|.:||
  Fly   195 EILTVIIAGLLAITLQNAERR 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbmNP_001260757.1 Tetraspannin 8..198 CDD:278750 53/200 (27%)
tetraspanin_LEL <109..169 CDD:239401 20/65 (31%)
Tsp42EqNP_523643.2 Tetraspannin 8..209 CDD:278750 54/201 (27%)
tetraspanin_LEL 95..173 CDD:239401 21/78 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001737
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.910

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