DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbm and Tsp42Ei

DIOPT Version :9

Sequence 1:NP_001260757.1 Gene:lbm / 35623 FlyBaseID:FBgn0016032 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_001260756.1 Gene:Tsp42Ei / 35618 FlyBaseID:FBgn0033130 Length:229 Species:Drosophila melanogaster


Alignment Length:228 Identity:66/228 - (28%)
Similarity:99/228 - (43%) Gaps:28/228 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGCATTSVKIASIVLNAVLGFLAAGAIGWIAYNADTETEEFV-----IAAYIACSL---ILVFAL 57
            ||...|:||...::||.|...|....|.:..:...:..|..|     :|..:..:|   ||:.|:
  Fly     1 MGLGATTVKHVLLLLNFVFSVLGLALIAFGIFFLISAAENAVSIGKNVAGGLIIALGVVILIIAI 65

  Fly    58 LGIFAAIRESVV--LTATSAVFLLILAILQIVSTCLFLH------EFDVKSGRDMVEVAWQA--N 112
            .|..|||.|:.|  |....||.|||||  |::...:..|      ...:..|.|.:   |::  |
  Fly    66 FGCLAAIHEAPVRLLIYVGAVVLLILA--QLIFLGMSSHGTKDGISGSINEGFDRL---WESERN 125

  Fly   113 NMDSLQQKH---ECCGQSSAQDYIHLSLLIPPSCYAD--LQQTPDHLYLDGCIEKVQSFYESDKL 172
            ...:|....   :|||.:|::||..:...||.||..:  ...||..::..||......:.:...|
  Fly   126 QTGALSYYESWLQCCGVNSSEDYWIIHHGIPSSCCPESKCMDTPSRVFKTGCKAAFVKYLDDKLL 190

  Fly   173 RFIIVSWVLVAFELICFALAVFLAISFKNKQRR 205
            .|.||.|:||..|.:.......|..|.||:.||
  Fly   191 VFKIVCWLLVIGEAVGAVFGWLLYSSVKNQSRR 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbmNP_001260757.1 Tetraspannin 8..198 CDD:278750 58/212 (27%)
tetraspanin_LEL <109..169 CDD:239401 17/66 (26%)
Tsp42EiNP_001260756.1 Tetraspannin 7..217 CDD:278750 58/214 (27%)
DUF373 <17..>101 CDD:299895 25/85 (29%)
tetraspanin_LEL 104..189 CDD:239401 19/87 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467731
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001737
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.840

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