DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbm and cd63

DIOPT Version :10

Sequence 1:NP_523639.1 Gene:lbm / 35623 FlyBaseID:FBgn0016032 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_955837.1 Gene:cd63 / 321461 ZFINID:ZDB-GENE-030131-180 Length:237 Species:Danio rerio


Alignment Length:176 Identity:38/176 - (21%)
Similarity:85/176 - (48%) Gaps:29/176 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 LILVFALLGIFAAIRESVVLTATSAVFLLILAILQI---VSTCLF---LHEFDVKSGRDMV---- 105
            :|...:..|...|.:|:..:..|.|:.|.::.|.:|   ::..:|   ::|...:|...|:    
Zfish    61 IIFFISFFGCCGAWKENQCMVVTFAIILSLIVITEIGAGIAGYIFRGKVNELLDQSFNTMIAGYN 125

  Fly   106 EVAWQANNMDSLQQKHECCGQSSAQDYIHLS---LLIPPSCYADLQQT--------PDHLYLDGC 159
            :.......:||:|::.:|||.:|:.|:::.|   :.:|.||..::.:.        |..:||:||
Zfish   126 KTEEYRTTLDSIQKQLKCCGGNSSSDWVNFSADHISVPDSCCKNVTKNCGIGAMTKPTVIYLEGC 190

  Fly   160 IEKVQSFYES---DKLRFIIVSWVLVAF-ELICFALAVFLAISFKN 201
                |...|:   :.:.:|.|..:::.| ::....||..|:.:.::
Zfish   191 ----QPILETRIKENILWIAVGALVIGFVQITGIVLACILSRAIRS 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbmNP_523639.1 Tetraspanin <47..196 CDD:459767 37/169 (22%)
tetraspanin_LEL <109..169 CDD:239401 18/70 (26%)
cd63NP_955837.1 Tetraspanin 10..228 CDD:459767 38/170 (22%)
CD63_LEL 103..202 CDD:239419 23/102 (23%)

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