DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbm and Tspan18

DIOPT Version :9

Sequence 1:NP_001260757.1 Gene:lbm / 35623 FlyBaseID:FBgn0016032 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_899003.1 Gene:Tspan18 / 241556 MGIID:1917186 Length:248 Species:Mus musculus


Alignment Length:255 Identity:52/255 - (20%)
Similarity:94/255 - (36%) Gaps:69/255 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GCATTSVKIASIVLN--AVLGFLAAGAIG-WIAYNADTETEEFV-------IAAYIACS---LIL 53
            |...:.:|....|.|  ..||......:| |:..: .|...|.|       ..|||..:   |:.
Mouse     3 GDCLSCMKYLMFVFNFFVFLGGACLLGVGIWVLVD-PTGFREIVATNPLLTTGAYIVLAMGGLLF 66

  Fly    54 VFALLGIFAAIRESVVLTATSAVFLLILAILQIVSTCL-------FLHEFDVK---------SGR 102
            :...||...|:||:..|.....:|:||:.::::.:..|       ...||..|         :..
Mouse    67 LLGFLGCCGAVRENRCLLLFFFLFILIIFLVELSAAILAFIFREHLTREFFTKELTKHYQGDNDT 131

  Fly   103 DMVEVAWQANNMDSLQQKHECCGQSSAQDYIHLSLL---------IPPSCYADLQQTPDHLYL-- 156
            |:....|     :|:.....|||.:..:|:...|:.         :|.:|.....||.|.:.|  
Mouse   132 DVFSATW-----NSVMITFGCCGVNGPEDFKLASVFRLLTLDTEEVPKACCRREPQTRDGVVLSR 191

  Fly   157 -------------DGCIEKVQSFYESDKLRFIIVSWV----LVAFE--LICFALAVFLAI 197
                         .||...:.:.:|:    ::.::..    ::|.|  |:.||:.:|..|
Mouse   192 EECQLGRNPFINKQGCYTVILNTFET----YVYLAGAFAIGVLAIELFLMVFAMCLFRGI 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbmNP_001260757.1 Tetraspannin 8..198 CDD:278750 51/249 (20%)
tetraspanin_LEL <109..169 CDD:239401 15/83 (18%)
Tspan18NP_899003.1 Tetraspannin 10..243 CDD:366035 49/242 (20%)
uroplakin_I_like_LEL 105..218 CDD:239409 20/121 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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