DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbm and tsp-7

DIOPT Version :9

Sequence 1:NP_001260757.1 Gene:lbm / 35623 FlyBaseID:FBgn0016032 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_492636.1 Gene:tsp-7 / 192062 WormBaseID:WBGene00006633 Length:232 Species:Caenorhabditis elegans


Alignment Length:225 Identity:59/225 - (26%)
Similarity:95/225 - (42%) Gaps:41/225 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 TSVKIASIVLNAV-----LGFLAAGAIGWIAYN--ADTETEEFV---IAAYIACSLILVFALLGI 60
            |.||....:.|.|     |..:..|:|..:.::  .|...:|.:   |...:..||..:...||.
 Worm     7 TIVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDILGDERLATPILLLVIGSLCTLLGFLGC 71

  Fly    61 FAAIRESVVLTATSAVFLLILAILQIVSTCL--FLHE-FDVKSGRDM------------VEVAWQ 110
            ..||||:..||.:.||.|.:|...:|.:..:  .||: |.:..|..:            ||.|| 
 Worm    72 CGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGMVRYHESRGVESAW- 135

  Fly   111 ANNMDSLQQKHECCGQSSAQDYIHLSLLIPPSCYAD------LQQTPDHLYLDGCIEKVQSFYES 169
                |...|..||||.:::.|::..: .||.||..:      .:..|  |:..|||..|:.:...
 Worm   136 ----DKTHQLFECCGVTNSSDWLTFT-TIPDSCCIEEIEGCARENAP--LFEPGCIHSVEQWVLK 193

  Fly   170 DKLRFIIVSWVLVAFEL--ICFALAVFLAI 197
            :......:..||.|.:|  :|||..:..:|
 Worm   194 NGAMVGGICAVLAAIQLVGVCFACCLSKSI 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbmNP_001260757.1 Tetraspannin 8..198 CDD:278750 58/223 (26%)
tetraspanin_LEL <109..169 CDD:239401 18/65 (28%)
tsp-7NP_492636.1 Tetraspannin 8..223 CDD:278750 57/222 (26%)
NET-5_like_LEL 104..195 CDD:239418 25/98 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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