DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbm and Prph2

DIOPT Version :10

Sequence 1:NP_523639.1 Gene:lbm / 35623 FlyBaseID:FBgn0016032 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_032964.1 Gene:Prph2 / 19133 MGIID:102791 Length:346 Species:Mus musculus


Alignment Length:219 Identity:40/219 - (18%)
Similarity:74/219 - (33%) Gaps:78/219 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 YIACSLILVFALLGIFAAIRESVVLTATS---------------AVFLLILAILQIVSTCLFLHE 95
            ::..|||.|..|..:|.::...:...|..               ||.:....||.:|:.|.||..
Mouse    59 FVPNSLIGVGVLSCVFNSLAGKICYDALDPAKYAKWKPWLKPYLAVCIFFNVILFLVALCCFLLR 123

  Fly    96 --------FDVKSG------RDMVEVAWQANNMDSLQQKHECCGQSSAQDYIHLSLL-------- 138
                    :.:|:|      .|.....:....:|.||.:.:|||.:..:|:..:..:        
Mouse   124 GSLESTLAYGLKNGMKYYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEIQWISNRYLDFS 188

  Fly   139 --------------------IPPSC--------------------YADLQQTPD-HLYLDGCIEK 162
                                :|.||                    |:...||.: :|:|.||...
Mouse   189 SKEVKDRIKSNVDGRYLVDGVPFSCCNPSSPRPCIQYQLTNNSAHYSYDHQTEELNLWLRGCRAA 253

  Fly   163 VQSFYESDKLRFIIVSWVLVAFEL 186
            :.::|.|......:|:.::..||:
Mouse   254 LLNYYSSLMNSMGVVTLLVWLFEV 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbmNP_523639.1 Tetraspanin <47..196 CDD:459767 40/218 (18%)
tetraspanin_LEL <109..169 CDD:239401 18/108 (17%)
Prph2NP_032964.1 Tetraspanin 16..181 CDD:459767 25/121 (21%)
peripherin_like_LEL 120..262 CDD:239415 24/141 (17%)
Interaction with MREG. /evidence=ECO:0000269|PubMed:17260955 341..346
Blue background indicates that the domain is not in the aligned region.

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