DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbm and Tsp68C

DIOPT Version :9

Sequence 1:NP_001260757.1 Gene:lbm / 35623 FlyBaseID:FBgn0016032 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_729926.1 Gene:Tsp68C / 117407 FlyBaseID:FBgn0043550 Length:362 Species:Drosophila melanogaster


Alignment Length:246 Identity:55/246 - (22%)
Similarity:93/246 - (37%) Gaps:63/246 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ATTSVKIAS----IVLNAVLGFLAAGAIGWIAYNADTETEEFVIAAYIACSLILVFALLGIFAAI 64
            |.:|.:::|    ::....||...||.:..:|         .|:..:.:|  :..:..|.|:  .
  Fly    46 AASSDRLSSLPQPLLFYIALGVAIAGFVATLA---------AVVGFWASC--LHTYCFLTIY--F 97

  Fly    65 RESVVLTATSAVFLLILAILQIVSTCL--FLHEFD-VKSGRDMVEVAWQ---ANNMDSLQQKHEC 123
            ...|||..|.:|..|.:.:.   ..||  .|.|.. |:|.:....|..|   .|.:|..|.:..|
  Fly    98 LSVVVLLLTESVLCLAITLW---PHCLGISLDETQMVRSLQSNYGVPGQEQFTNALDLAQVRFGC 159

  Fly   124 CGQSSAQDYIHLSLL-----------IPPSC-----------YAD-------LQQTPDHL----- 154
            ||..|:.|| ..||.           :|.||           |.|       :.|:.:.|     
  Fly   160 CGMRSSLDY-DTSLWRLQGYGQRNWPVPLSCCFLKNAGHSMAYLDPKPANESMCQSLERLSYERE 223

  Fly   155 -YLDGCIEKVQSFYESDKLRFIIVSWVLVAFELICFALAVFLAISFKNKQR 204
             :.:.|:..:.::|......|:..|.:|...| .|..||:.::.:....||
  Fly   224 RHTESCLPHLDNWYREQYSIFLGASLILAMIE-FCVLLAIIMSCTGLASQR 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbmNP_001260757.1 Tetraspannin 8..198 CDD:278750 51/234 (22%)
tetraspanin_LEL <109..169 CDD:239401 21/97 (22%)
Tsp68CNP_729926.1 Tetraspannin 8..267 CDD:278750 53/238 (22%)
tetraspanin_LEL 117..241 CDD:239401 28/127 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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