DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbm and tspan4

DIOPT Version :10

Sequence 1:NP_523639.1 Gene:lbm / 35623 FlyBaseID:FBgn0016032 Length:208 Species:Drosophila melanogaster
Sequence 2:XP_002936078.2 Gene:tspan4 / 100492951 XenbaseID:XB-GENE-29081423 Length:330 Species:Xenopus tropicalis


Alignment Length:433 Identity:90/433 - (20%)
Similarity:146/433 - (33%) Gaps:93/433 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   276 LNFKNPNDF-----PDILA---HLSTIHSGKYQL-----------QDVAHSVVDKGNGKKARHEA 321
            ||.||..:|     |.:|:   :::.|.|...:|           |:...|:..:...|..|.:.
 Frog    10 LNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKE 74

  Fly   322 KPSKGAMRKGGKAAPGEVKSSLPEQTDREAAATVAKKSKMADCRE---KVTTPQVEERNG-NDTE 382
            :......::....:|...||..|.....       ||.|..:..|   ||..|.|:|... :|..
 Frog    75 EKESSREKRERSRSPRRTKSRSPSPAPE-------KKEKTPELPEPSVKVKEPSVQEATSTSDIL 132

  Fly   383 NVKPAENRKNPQQRNDFAVPKAPMPKKAVGTNSANVQNAAARPLRKVPPPGTPKK---------S 438
            .|...|....|::.:.....|....|:.....|.:...:.:|...:.|....|::         |
 Frog   133 KVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYS 197

  Fly   439 PQKRVTMAGTGRKECKKALTPALVQIQQSSSHRSSSNP-------SARASGGNSKGGGSNSNQPN 496
            |::|   ....|:...:..||.. ::.....||.|.:|       ||..||.:|....|.|..| 
 Frog   198 PRRR---PSPRRRPSPRRRTPPR-RMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSP- 257

  Fly   497 SKKEPEYGAQEQPRVEQEKPQQATAQQKQQPQ--------------QQQSNRNNKPTVS------ 541
            .||.|:..:....:..:..|..:..:::.:|.              .|||||..|..||      
 Frog   258 PKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRT 322

  Fly   542 --------NTAKSSTREPAVKESDPEPMELDAEDDCNIGEMMDTSASNNSLDFVMQSSSGEFDLN 598
                    .|.|..:..||.|   |..:||...:|.. |:|....:......:..|:.....|  
 Frog   323 SGKVTKHKGTEKRESPSPAPK---PRKVELSESEDKG-GKMAAADSVQQRRQYRRQNQQSSSD-- 381

  Fly   599 FSGDLPDMNLGDDAAADEADDLDFLCAGPAKQTRSKSQKRKKS 641
             ||       ...::.||......:..|...:.|..|..|..|
 Frog   382 -SG-------SSSSSEDERPKRSHVKNGEVGRRRRHSPSRSAS 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbmNP_523639.1 Tetraspanin <47..196 CDD:459767
tetraspanin_LEL <109..169 CDD:239401
tspan4XP_002936078.2 Tetraspanin 102..320 CDD:459767 50/229 (22%)
NET-5_like_LEL 197..294 CDD:239418 23/101 (23%)
Blue background indicates that the domain is not in the aligned region.

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