DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42El and tspan2a

DIOPT Version :10

Sequence 1:NP_523638.1 Gene:Tsp42El / 35622 FlyBaseID:FBgn0033134 Length:217 Species:Drosophila melanogaster
Sequence 2:NP_001018160.1 Gene:tspan2a / 378854 ZFINID:ZDB-GENE-050522-511 Length:211 Species:Danio rerio


Alignment Length:232 Identity:60/232 - (25%)
Similarity:105/232 - (45%) Gaps:50/232 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GCATGTIKYSLFLFNALWAILGILVLIFG-----------GLGWGAMPDAYAIGILIL---GGTI 52
            ||.. .:||.||:||.::.:.|.|||..|           .|.....|:.:.|.:.||   ||.:
Zfish     6 GCMK-CVKYLLFVFNFIFWLSGSLVLAVGLWLRFDPDTTSLLSENDAPENFFIAVYILIGAGGIM 69

  Fly    53 LVISLFGCCGAVRESPRMLWTYASLLLILLLLIVA---FIILNPKDVFKKYALQTVENQWELEQT 114
            :::..|||.||||||..:|.::.:.||::....||   |..||...:.|:     |:|.:| ..|
Zfish    70 MIVGFFGCFGAVRESQCLLGSFFACLLLIFGAEVAAGVFGFLNKDQIIKE-----VQNYYE-SAT 128

  Fly   115 KPGSMDIIQKTYY----CCGRDSAQDYLDIKFWNNTVPSSCCKDDSCVNPLNLYVRGCLIKVEEA 175
            |..:..:|...::    |||.:|:             |...|.:.:         :.|:..:|:.
Zfish   129 KMENGTVITSAFHSVLDCCGTESS-------------PIETCTEGN---------KDCVQAIEDF 171

  Fly   176 FADEATTLGYLEWGLLGFNAVILLLAIILAIHYTNRR 212
            |.::...:||:..|:.|...:.::.:::|.....|.|
Zfish   172 FNEKLFIIGYVGIGIAGVMVIGMIFSMVLCCAIRNSR 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42ElNP_523638.1 Tetraspanin 8..>130 CDD:459767 43/142 (30%)
tetraspanin_LEL 94..178 CDD:239401 16/87 (18%)
tspan2aNP_001018160.1 Tetraspanin 11..202 CDD:459767 56/218 (26%)

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