DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp42El and tsp-21

DIOPT Version :10

Sequence 1:NP_523638.1 Gene:Tsp42El / 35622 FlyBaseID:FBgn0033134 Length:217 Species:Drosophila melanogaster
Sequence 2:NP_001370185.1 Gene:tsp-21 / 259720 WormBaseID:WBGene00023491 Length:301 Species:Caenorhabditis elegans


Alignment Length:249 Identity:57/249 - (22%)
Similarity:99/249 - (39%) Gaps:50/249 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 FLFNALWAILGILVLIFGGLGWGA-------MPDAY----AIGILILGG-TILVISLFGCCGAVR 65
            ||.|..:.|.|:..||.|...:.:       .|.:|    |.|:.:..| ||.:|...|..|...
 Worm    18 FLANVCFLISGLSSLIVGVWLYSSKNNFIELTPTSYSALSAAGLCVFTGVTIFIIVAVGYLGVSW 82

  Fly    66 ESPRMLWTYASLLLILLLLI-VAFII-----LNPKDVFKKYALQTVENQWELEQTKPG------- 117
            .:..:|::|...:::|:|:. :|.|.     ...|:..:|..|..:.....:  ||.|       
 Worm    83 SNKSLLYSYIGFVILLILVHGIARITGSLHKEEAKENLRKSMLHNINTTAVV--TKIGREIKLSL 145

  Fly   118 SMDIIQKTYYCCGRDSAQDYLDIKFWNNTV--PSSCCKDDSCVNPLN--------------LYVR 166
            :.|.:|:...|||.|:..|:.....|.|.:  |.||| |....:..|              ||.:
 Worm   146 TWDHLQRELQCCGVDNYTDWHYSVHWPNNLYTPDSCC-DPQHFDAENGTENCGKLPDEQSLLYQK 209

  Fly   167 GCLIKVEEAFADEATTLGYLEWGLLGFNAVILLLAIIL------AIHYTNRRRR 214
            ||..|..:........:.::...|.....::|:|::::      :.|.|.|..|
 Worm   210 GCFPKFSDWLYHHIILVNWVTSILFVVEILLLILSLVVLRVLKNSRHKTRRSHR 263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42ElNP_523638.1 Tetraspanin 8..>130 CDD:459767 33/141 (23%)
tetraspanin_LEL 94..178 CDD:239401 26/106 (25%)
tsp-21NP_001370185.1 Tetraspanin 17..>158 CDD:459767 33/141 (23%)
CD151_like_LEL 106..223 CDD:239408 27/119 (23%)

Return to query results.
Submit another query.