DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42El and Prph2

DIOPT Version :10

Sequence 1:NP_523638.1 Gene:Tsp42El / 35622 FlyBaseID:FBgn0033134 Length:217 Species:Drosophila melanogaster
Sequence 2:NP_032964.1 Gene:Prph2 / 19133 MGIID:102791 Length:346 Species:Mus musculus


Alignment Length:259 Identity:54/259 - (20%)
Similarity:90/259 - (34%) Gaps:95/259 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 SLFLFNALWAILGILVLIFGGLG----WGAM-PDAYA---------IGILILGGTIL-VISLFGC 60
            |.|:.|:|..: |:|..:|..|.    :.|: |..||         :.:.|....|| :::|  |
Mouse    57 SHFVPNSLIGV-GVLSCVFNSLAGKICYDALDPAKYAKWKPWLKPYLAVCIFFNVILFLVAL--C 118

  Fly    61 CGAVRESPRMLWTYASLLLILLLLIVAFIILNPKDVFKKYALQTVENQWELEQTKPGSMDIIQKT 125
            |..:|.|......|..                 |:..|.|.......:..:::|    :|::|..
Mouse   119 CFLLRGSLESTLAYGL-----------------KNGMKYYRDTDTPGRCFMKKT----IDMLQIE 162

  Fly   126 YYCCGRDSAQDYLDIKFWNNT-------------------------VPSSCCKDDS---CV---- 158
            :.|||.:..:|:.:|::.:|.                         ||.|||...|   |:    
Mouse   163 FKCCGNNGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPSSPRPCIQYQL 227

  Fly   159 -------------NPLNLYVRGCLIKVEEAFADEATTLGYLEWGLLGFNAVILLLAIILAIHYT 209
                         ..|||::|||          .|..|.|.. .|:....|:.||..:..:..|
Mouse   228 TNNSAHYSYDHQTEELNLWLRGC----------RAALLNYYS-SLMNSMGVVTLLVWLFEVSIT 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42ElNP_523638.1 Tetraspanin 8..>130 CDD:459767 28/133 (21%)
tetraspanin_LEL 94..178 CDD:239401 25/128 (20%)
Prph2NP_032964.1 Tetraspanin 16..181 CDD:459767 32/147 (22%)
peripherin_like_LEL 120..262 CDD:239415 31/173 (18%)
Interaction with MREG. /evidence=ECO:0000269|PubMed:17260955 341..346
Blue background indicates that the domain is not in the aligned region.

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