DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp42Ej and tsp-13

DIOPT Version :9

Sequence 1:NP_523636.1 Gene:Tsp42Ej / 35620 FlyBaseID:FBgn0033132 Length:227 Species:Drosophila melanogaster
Sequence 2:NP_741692.1 Gene:tsp-13 / 189737 WormBaseID:WBGene00006639 Length:321 Species:Caenorhabditis elegans


Alignment Length:262 Identity:46/262 - (17%)
Similarity:88/262 - (33%) Gaps:60/262 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 W-KYGLLVTCILIVTCNVFFFSCGV----------------------TTWGSAVSVYGSYGSALC 51
            | |||:....|:.:.......:.||                      ..|.:......||...:.
 Worm    56 WAKYGIFTANIVFLIVGGLLLAMGVWLRTDSRFRNFISERYRQAVQEAFWEAPTLFAFSYIIIVL 120

  Fly    52 GGAVFGVAFLGMYVALKVSYKYSIYY-LICSGLVIAAL--GSY-LFTFTAMREQLMGRFEERMRD 112
            |..:..||.||.......|..:.|.| ::...|::|.|  |.| |:....:..:|.......::.
 Worm   121 GAVMMVVAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVELSDALNYMVQH 185

  Fly   113 LFERKTHSDDKMQPVHSLFGCCGIEGPQDY--LQEEHGALPSSCCYAFDCSKPAHVYEEGCSTKA 175
            .::......:.:..:.:.|.|||..|..|:  .:::   :|.||....|          ||..:.
 Worm   186 YYQGPGVVQESLDHLQTAFRCCGNAGCSDFRVFRQD---IPRSCDIRCD----------GCHFRI 237

  Fly   176 VATLRMQAELNYYSCMAIIALEFLGL-FTAY-----------------HLGKARKYAKTKIKDEE 222
            :..||:...:......|::..:.|.: |..|                 |...:.:..:..::|.:
 Worm   238 MIALRIGFSVTLIVFSAVVLCQVLTICFALYFVFMREKEVKIIYVEPPHRRHSHRLTRDTLRDHD 302

  Fly   223 TP 224
            .|
 Worm   303 LP 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EjNP_523636.1 Tetraspannin 11..211 CDD:278750 43/245 (18%)
tetraspanin_LEL 97..183 CDD:239401 15/87 (17%)
tsp-13NP_741692.1 Tetraspannin 58..269 CDD:278750 41/223 (18%)
tetraspanin_LEL 165..242 CDD:239401 14/89 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.770

Return to query results.
Submit another query.