DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp42Ei and tspan14

DIOPT Version :10

Sequence 1:NP_523635.2 Gene:Tsp42Ei / 35618 FlyBaseID:FBgn0033130 Length:229 Species:Drosophila melanogaster
Sequence 2:NP_001007871.1 Gene:tspan14 / 493257 XenbaseID:XB-GENE-868280 Length:270 Species:Xenopus tropicalis


Alignment Length:242 Identity:54/242 - (22%)
Similarity:97/242 - (40%) Gaps:55/242 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KHVLLLLNFVFSVLGLALIAFGIFF-----LISAAENAVSIGKNVAGGLIIALGVVILIIAIFGC 68
            |::|...|.:|.:.|:.|:..|::.     ::|.......:.......|::.:||::..:...||
 Frog    16 KYLLFSYNIIFWLSGMVLLGVGLWAWSEKGILSDITKVTRLHGFDPVWLVLVVGVIMFTLGFAGC 80

  Fly    69 LAAIHEAPVRLLIYVGAVVL-----LILAQLIFLGMSSHGTKDGISGSINEGFDRLWESERNQTG 128
            :.|:.|....|..:.||:||     |.:|.|.||      .:|.:.....:.|:...:|.|:...
 Frog    81 VGALRENICLLKFFCGAIVLIFFMELAVAVLAFL------FQDWVKDRAKDFFENNIKSYRDDID 139

  Fly   129 ALSYYESWL---QCCGVNSSEDYWIIHH--------------GIPSSCC---PESKCMDT----- 168
            ..:..:|..   ||||..|.:| |.::.              |:|.|||   |....::|     
 Frog   140 LQNLIDSLQKANQCCGAVSPDD-WDLNEYFNCSVENPSRERCGVPFSCCVPDPAQTVVNTQCGYD 203

  Fly   169 ---------PSRVFKTGCKAAFVKYLDDKLL----VFKIVCWLLVIG 202
                     |:..|..||.:|...:|...:.    ||.::..|.:.|
 Frog   204 ARRKKPNERPNTTFSKGCISALEAWLPRNIYIVAGVFLVISILQIFG 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EiNP_523635.2 Tetraspanin 8..214 CDD:459767 54/242 (22%)
tspan14NP_001007871.1 Tetraspanin 16..257 CDD:459767 54/242 (22%)
TM4SF9_like_LEL 113..233 CDD:239412 27/126 (21%)

Return to query results.
Submit another query.