DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Ei and Tspan12

DIOPT Version :10

Sequence 1:NP_523635.2 Gene:Tsp42Ei / 35618 FlyBaseID:FBgn0033130 Length:229 Species:Drosophila melanogaster
Sequence 2:NP_001015026.1 Gene:Tspan12 / 362326 RGDID:1311102 Length:305 Species:Rattus norvegicus


Alignment Length:274 Identity:50/274 - (18%)
Similarity:101/274 - (36%) Gaps:76/274 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 VLLLLNFVFSVLGLALIAFGIFF-------LISAAENAVSIGK-----NVAGGLIIALGVVILII 63
            :|..||.:|.::.::::|...:.       |...||..|....     .|...::||:...::|:
  Rat    13 LLYALNLLFWLMSISVLAVSAWMRDYLNNVLTLTAETRVEEAVILTYFPVVHPVMIAVCCFLIIV 77

  Fly    64 AIFGCLAAIHEAPVRLLIYVGAVVLLILAQLIFLGMSSHGTKDGI-----------SGSINEGFD 117
            .:.|....:....:.|..|.|.::::...:|. .|:.::..:..:           :...|.|..
  Rat    78 GMLGYCGTVKRNLLLLAWYFGTLLVIFCVELA-CGVWTYEQEVMVPVQWSDMVTLKARMTNYGLP 141

  Fly   118 RLWESERNQTGALSYYESWLQCCGVNSSEDY-------WIIHHGIPSSC-------CPESKCMDT 168
            |.    |..|.|.:|::...:||||....|:       |     .|.||       |.:....:.
  Rat   142 RY----RWLTHAWNYFQREFKCCGVVYFTDWLEMTEMDW-----PPDSCCVREFPGCSKQAHQED 197

  Fly   169 PSRVFKTGC------------KAAFVKYLDDKLLVFKIVCWLLVIGEAVGAVFGWLLY------- 214
            .|.:::.||            :...:::|...:.|.:|:..:|.|      ...|.||       
  Rat   198 LSDLYQEGCGKKMYSFLRGTKQLQVLRFLGISIGVTQILAMILTI------TLLWALYYDRREPG 256

  Fly   215 ----SSVKNQSRRN 224
                .|:||.:.::
  Rat   257 TDQMLSLKNDASQH 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EiNP_523635.2 Tetraspanin 8..214 CDD:459767 45/251 (18%)
Tspan12NP_001015026.1 Tetraspanin 10..246 CDD:459767 44/248 (18%)
TM4SF12_like_LEL 116..218 CDD:239410 20/110 (18%)

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