DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Eh and Tspan4

DIOPT Version :9

Sequence 1:NP_523634.1 Gene:Tsp42Eh / 35617 FlyBaseID:FBgn0033129 Length:231 Species:Drosophila melanogaster
Sequence 2:XP_030098725.1 Gene:Tspan4 / 64540 MGIID:1928097 Length:333 Species:Mus musculus


Alignment Length:184 Identity:50/184 - (27%)
Similarity:82/184 - (44%) Gaps:31/184 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LRYVLCVISGICALGGCLLIWYGAWL------LDSLSEEQRMLGMDHGEDLAAVLCVLLGTVIVV 66
            ::|::...:.:..||||.::..|.||      ..:||.....|.       ||.|.::.||.::.
Mouse   104 VKYLMFAFNLLFWLGGCGVLGVGIWLAATQGNFATLSSSFPSLS-------AANLLIVTGTFVMA 161

  Fly    67 ASIFGSVAVAKDSRVLLICYAV--LLVFLLIVQIVLVSISYAASRD-FLPDSLRQGLDDLWDLQH 128
            ....|.:...|:::.||:.:.|  ||||||...|.::..:|:...| :....|::|| .|:..| 
Mouse   162 IGFVGCIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSDKIDSYAQQDLKKGL-HLYGTQ- 224

  Fly   129 EGNSTLNTYEEW------LHCCGRNSAEDYLHLEKMP--PPSCCL--NRDCTKH 172
             ||..|.  ..|      ..|||.::..|:..:....  |.||||  :..|..|
Mouse   225 -GNVGLT--NAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSDSCGLH 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EhNP_523634.1 Tetraspannin 8..220 CDD:278750 50/184 (27%)
tetraspanin_LEL 109..192 CDD:239401 21/75 (28%)
Tspan4XP_030098725.1 Tetraspannin 104..321 CDD:366035 50/184 (27%)
NET-5_like_LEL 200..297 CDD:239418 22/81 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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