DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Eh and ROM1

DIOPT Version :10

Sequence 1:NP_523634.1 Gene:Tsp42Eh / 35617 FlyBaseID:FBgn0033129 Length:231 Species:Drosophila melanogaster
Sequence 2:NP_000318.2 Gene:ROM1 / 6094 HGNCID:10254 Length:351 Species:Homo sapiens


Alignment Length:260 Identity:53/260 - (20%)
Similarity:88/260 - (33%) Gaps:102/260 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LCVISGICAL-GGCLLIWYGAWLLDSLSEEQRMLGMDHGEDLAAVLC--------------VLLG 61
            |.::|.:.|| ||.:|:..|..|:     :.|.||     ...|..|              |.||
Human    21 LWLLSWLLALAGGVILLCSGHLLV-----QLRHLG-----TFLAPSCQFPVLPQAALAAGAVALG 75

  Fly    62 TVIVVASIFGSVAVAKDS--RVLLICYAVLLVFLLIV------QIVLVSISYAASRDFLPDSLRQ 118
            |.:|      .|..::.|  ..|...:..:|..||:.      .:::|.:..|.:   ||.||.:
Human    76 TGLV------GVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGLLVVGLGLALA---LPGSLDE 131

  Fly   119 GLDD--LWDLQH----------EGNSTLNTYEEWLHCCGRNSAEDY------------------- 152
            .|::  :..|.|          :....::..:...|||||:..:|:                   
Human   132 ALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGYKDWFGVQWVSSRYLDPGDRDVA 196

  Fly   153 ---------LHLEKMPPPSCC---LNRDCTK-----------------HLNLFMTGCEVKFKEYV 188
                     |:|....|.|||   ..|.|.:                 :.||:..||.....|::
Human   197 DRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSYAHPLFDPRQPNQNLWAQGCHEVLLEHL 261

  Fly   189  188
            Human   262  261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EhNP_523634.1 Tetraspanin 8..217 CDD:459767 53/260 (20%)
ROM1NP_000318.2 peripherin_like_LEL 126..265 CDD:239415 25/136 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 331..351
Blue background indicates that the domain is not in the aligned region.

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