DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Eh and Cd82

DIOPT Version :9

Sequence 1:NP_523634.1 Gene:Tsp42Eh / 35617 FlyBaseID:FBgn0033129 Length:231 Species:Drosophila melanogaster
Sequence 2:NP_001129527.1 Gene:Cd82 / 12521 MGIID:104651 Length:266 Species:Mus musculus


Alignment Length:175 Identity:38/175 - (21%)
Similarity:78/175 - (44%) Gaps:22/175 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RLLRYVLCVISGICALGGCLLIWYGAWLL-DSLSEEQRMLGMDHGEDLAAVLCVLLGTVIVVASI 69
            ::.:|.|.:.:.:..:.|.:::.:|.|:| |..|....:........:.|.:.:.:|.:.:|...
Mouse     7 KVTKYFLFLFNLLFFILGAVILGFGVWILADKNSFISVLQTSSSSLQVGAYVFIGVGAITIVMGF 71

  Fly    70 FGSVAVAKDSRVLLICYAVLLVFLLIVQIVLVSISYAASRDFLPDSLRQGL-DDLWDL--QHEGN 131
            .|.:....:.|.||..|.|.|:.:||.|:.:..:.|     |..|.|::.: :.:.|:  .:..|
Mouse    72 LGCIGAVNEVRCLLGLYFVFLLLILIAQVTVGVLFY-----FNADKLKKEMGNTVMDIIRNYTAN 131

  Fly   132 STLNTYEEW------LHCCGRNSAEDYLHLEKMP-------PPSC 163
            :|.:..|.|      :.|||..|..::...|::.       |.||
Mouse   132 ATSSREEAWDYVQAQVKCCGWVSHYNWTENEELMGFTKTTYPCSC 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EhNP_523634.1 Tetraspannin 8..220 CDD:278750 38/173 (22%)
tetraspanin_LEL 109..192 CDD:239401 16/71 (23%)
Cd82NP_001129527.1 CD37_CD82_like_LEL 106..228 CDD:239413 17/76 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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