DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Eg and lbm

DIOPT Version :9

Sequence 1:NP_523633.1 Gene:Tsp42Eg / 35616 FlyBaseID:FBgn0033128 Length:218 Species:Drosophila melanogaster
Sequence 2:NP_001260757.1 Gene:lbm / 35623 FlyBaseID:FBgn0016032 Length:208 Species:Drosophila melanogaster


Alignment Length:237 Identity:75/237 - (31%)
Similarity:108/237 - (45%) Gaps:51/237 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MACSTNVLKGFALFWDIILALFGLVVIGLGVHIIY----KFEHFNTAAFVIIAVGVVVVLTALFG 61
            |.|:|..:|..::   ::.|:.|.:..|....|.|    :.|.|..||:  ||..:::|. ||.|
  Fly     1 MGCATTSVKIASI---VLNAVLGFLAAGAIGWIAYNADTETEEFVIAAY--IACSLILVF-ALLG 59

  Fly    62 ALGAARES---SATSKVFVVILIVLVILEVLAVGFLWVFQTSLLINVDKTFDKLWNDQPVPIKPG 123
            ...|.|||   :|||.||::||.:|.|:           .|.|.::   .||         :|.|
  Fly    60 IFAAIRESVVLTATSAVFLLILAILQIV-----------STCLFLH---EFD---------VKSG 101

  Fly   124 NQ--------SQIASLERWLDCCGNVGPSDYI----LPPNSCY---NGESDKLNLEGCRQKFLDF 173
            ..        :.:.||::..:|||.....|||    |.|.|||   ....|.|.|:||.:|...|
  Fly   102 RDMVEVAWQANNMDSLQQKHECCGQSSAQDYIHLSLLIPPSCYADLQQTPDHLYLDGCIEKVQSF 166

  Fly   174 IADRWTTFNLVSLVLLGVELICALLAYVLANSIVNRWRRSKY 215
            .......|.:||.||:..||||..||..||.|..|:.||.::
  Fly   167 YESDKLRFIIVSWVLVAFELICFALAVFLAISFKNKQRRMEF 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EgNP_523633.1 Tetraspannin 17..202 CDD:395265 65/206 (32%)
tetraspanin_LEL 95..176 CDD:239401 26/95 (27%)
lbmNP_001260757.1 Tetraspannin 8..198 CDD:278750 68/218 (31%)
tetraspanin_LEL <109..169 CDD:239401 20/59 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45442985
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001737
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.840

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