DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp42Eg and Cd53

DIOPT Version :10

Sequence 1:NP_523633.1 Gene:Tsp42Eg / 35616 FlyBaseID:FBgn0033128 Length:218 Species:Drosophila melanogaster
Sequence 2:NP_031677.1 Gene:Cd53 / 12508 MGIID:88341 Length:219 Species:Mus musculus


Alignment Length:224 Identity:50/224 - (22%)
Similarity:98/224 - (43%) Gaps:49/224 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 STNVLKGFALFWDIILALFGLVVIGLGVH--------IIYKFEHFNTAAFVIIAVGVVVVLTALF 60
            |..:||.....::::..:.|..::|.|::        ::::...|.|...:::.||.::::.|..
Mouse     5 SLKLLKYVLFIFNLLFWVCGCCILGFGIYFLVQNTYGVLFRNLPFLTLGNILVIVGSIIMVVAFL 69

  Fly    61 GALGAARESSATSKVFVVILIVLVILEVLAVGFLWVFQTSLLINV-------------DKTFDKL 112
            |.:|:.:|:......|.|:|:::::.||.....|:|::..|...|             |.:..|.
Mouse    70 GCMGSIKENKCLLMSFFVLLLIILLAEVTIAILLFVYEQKLNTLVAEGLNDSIQHYHSDNSTMKA 134

  Fly   113 WNDQPVPIKPGNQSQIASLERWLDCCGNVGPSDYIL-PPNSCYNGESDKLNLEGCRQKFLDFIAD 176
            |:               .::..|.|||..|.||:.. ||:||.:|    .:::||..|     |.
Mouse   135 WD---------------FIQTQLQCCGVNGSSDWTSGPPSSCPSG----ADVQGCYNK-----AK 175

  Fly   177 RWTTFNLVSLVLLGVELICALLAYVLANS 205
            .|...|   .:.:|:..||..:..||..|
Mouse   176 SWFHSN---FLYIGIITICVCVIQVLGMS 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EgNP_523633.1 Tetraspanin 17..204 CDD:459767 46/208 (22%)
tetraspanin_LEL 95..176 CDD:239401 21/94 (22%)
Cd53NP_031677.1 Tetraspanin 9..208 CDD:459767 49/220 (22%)
CD53_like_LEL 104..186 CDD:239417 24/108 (22%)

Return to query results.
Submit another query.