DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp42Ef and Tsp39D

DIOPT Version :9

Sequence 1:NP_523632.2 Gene:Tsp42Ef / 35615 FlyBaseID:FBgn0033127 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_523612.3 Gene:Tsp39D / 35405 FlyBaseID:FBgn0032943 Length:235 Species:Drosophila melanogaster


Alignment Length:244 Identity:54/244 - (22%)
Similarity:95/244 - (38%) Gaps:37/244 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAS--TSSVKLIVYALDVLCTLLALVLISFGIYVAVSYNLNEIGQLTAY-GYVG----------- 51
            |||  .:.||.:.:..::|..|..|::...|..|.::|        ..| .:|.           
  Fly     1 MASGGLTCVKYLTFFCNLLFALTGLLIFLVGGMVQLNY--------AHYSNFVSDHVWTAPIILM 57

  Fly    52 -LGAAALLVVLWGYLSAWRENVCCTVTFIIFLCLVIIAQFAV---VYLLITQEKTVASNLANALE 112
             :|||..::...|...|.:|:.|..::|.:...::.:.:..:   .|:..|....:..:..|:..
  Fly    58 IVGAAVAVICFLGCCGALKESSCMILSFALLAVVIFLFEIGLGLAGYVKHTGLHQIMESQFNSTM 122

  Fly   113 ATWEEELNSPGAMSLYQNWFQCCGRGSPQDYIV---NERLPPETC-FRNHDKSKPENLIHT---G 170
            ..::|..:...|.:|.|....|||...|.|:..   |..||...| ..|..::|.....|.   |
  Fly   123 QHYKERADYRDAWTLLQTELDCCGINGPNDWETVYRNSTLPAACCSVINLSEAKECTNTHATQHG 187

  Fly   171 CRVEFENYWQHLTKIFNILALVLIGFELLLSVISCRLCNSIRNDARRSY 219
            |..:........|.|...:.|.:.|.::|..:.:|.|..|.    ||||
  Fly   188 CLQKLLEILDSKTLILASVVLGVAGIQMLTILFACCLYRSF----RRSY 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EfNP_523632.2 Tetraspannin 7..211 CDD:278750 46/226 (20%)
tetraspanin_LEL 103..181 CDD:239401 19/84 (23%)
Tsp39DNP_523612.3 Tetraspannin 8..227 CDD:278750 46/226 (20%)
tetraspanin_LEL 104..200 CDD:239401 21/95 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.