DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp42Ee and TM4SF

DIOPT Version :10

Sequence 1:NP_523631.1 Gene:Tsp42Ee / 35614 FlyBaseID:FBgn0029506 Length:228 Species:Drosophila melanogaster
Sequence 2:NP_001261159.1 Gene:TM4SF / 37786 FlyBaseID:FBgn0020372 Length:292 Species:Drosophila melanogaster


Alignment Length:192 Identity:41/192 - (21%)
Similarity:80/192 - (41%) Gaps:35/192 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KYILFIFNTIVSVIGILGIVYGVLIL--KSIGVVEVNGQVGFPIQALMPIILISLGSIVVFISFL 71
            ||:::.:..::::.|...|..|..:|  .|:....|..::..|     ..||:.||.:...:.::
  Fly    11 KYLVYSYVVLLALTGAAQIFLGTSLLWGHSVYYGIVQNKLWAP-----AAILLCLGPVTFILCWM 70

  Fly    72 GCCGAIRESVCMTMSYATFLLILLILQLTFVVLLFTHREEFENAMGNVIENAW------------ 124
            ||....:...|:...:|..|:..:.:|..........||....::...|::::            
  Fly    71 GCQATNQRKRCLLGMFAALLVACICVQFIICGWSLAMRENLPTSVEIFIDDSFVEFLDKFSRTKV 135

  Fly   125 NSEHTYKGGVFDTIQKSLHCCGSSSALDYIGKGDLVPPSCCS-------GSCLIPTNYYPGC 179
            ::.|     :::.:|..|.|||....|||  :...:|.||||       .:|  .|:|..||
  Fly   136 DNLH-----LWNRMQSQLQCCGVDGPLDY--RRLSLPWSCCSRPEHAYESAC--DTHYKRGC 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EeNP_523631.1 Tetraspanin 8..217 CDD:459767 41/192 (21%)
TM4SFNP_001261159.1 Tetraspanin 10..224 CDD:459767 41/192 (21%)

Return to query results.
Submit another query.