DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp42Ee and Tsp42En

DIOPT Version :9

Sequence 1:NP_001260753.1 Gene:Tsp42Ee / 35614 FlyBaseID:FBgn0029506 Length:228 Species:Drosophila melanogaster
Sequence 2:NP_001260758.1 Gene:Tsp42En / 35624 FlyBaseID:FBgn0033135 Length:218 Species:Drosophila melanogaster


Alignment Length:245 Identity:70/245 - (28%)
Similarity:103/245 - (42%) Gaps:44/245 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDCGTSMVKYILFIFNTIVSVIGILGIVYGVLILKSIGVVEVNGQVGFPIQALMPIILISLGSIV 65
            |||.||.:|.:|.:.|.::|:||:        .|.::.|.|:|.......:.:..::.|.:|:.|
  Fly     1 MDCRTSFLKAVLIVLNVLLSLIGV--------TLIALSVYELNSSTPGTFEHIAIVVQIFVGTFV 57

  Fly    66 VFISFLGCCGAIRESVCMTMSYATFLLILLILQLTFVVLLFTHREEFENAMGNVIENAWNSEHTY 130
            |..|||||....|.|:.:..||...|||||.||:  .::...|..::...........|..:.|.
  Fly    58 VLTSFLGCFATARVSLGLVWSYVICLLILLCLQI--YIIAAAHSTDYVERSKKDFLATWADQRTN 120

  Fly   131 KGGVFDTIQKSLHCCGSSSALDYIGKGDLVPPSC-----------CSGSCLIPTNYYPGCRGKFV 184
            ...: ..:::...|||...|.|||..|..:|.||           .||.||           :.|
  Fly   121 VERI-SLLEQKYSCCGQLGAHDYILMGRGIPLSCYKDQERREYSLFSGGCL-----------QAV 173

  Fly   185 ELMTTGSDNAKYVGIGLI------GIELIGFIFACCLANNVRNYKRRNAY 228
            :...|  ||   |.||||      .:|......|..|...|||..||..:
  Fly   174 QAHAT--DN---VAIGLIIKWLLLLVEFAALGAATHLGITVRNKLRRERF 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EeNP_001260753.1 Tetraspannin 8..219 CDD:278750 60/227 (26%)
tetraspanin_LEL 106..187 CDD:239401 19/91 (21%)
Tsp42EnNP_001260758.1 Tetraspannin 8..199 CDD:278750 58/217 (27%)
tetraspanin_LEL 96..180 CDD:239401 20/97 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467716
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001737
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.840

Return to query results.
Submit another query.