DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Ed and ROM1

DIOPT Version :10

Sequence 1:NP_523630.1 Gene:Tsp42Ed / 35613 FlyBaseID:FBgn0029507 Length:227 Species:Drosophila melanogaster
Sequence 2:NP_000318.2 Gene:ROM1 / 6094 HGNCID:10254 Length:351 Species:Homo sapiens


Alignment Length:205 Identity:44/205 - (21%)
Similarity:78/205 - (38%) Gaps:60/205 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 ILFVICGILLITFGSIMVSTIKDFSGVGETFTANSVAIII-----LVLGCVVFLVAFMGCCGAIR 76
            :|.:..|::|:..|.::|    ....:| ||.|.|....:     |..|.|......:| .||.|
Human    27 LLALAGGVILLCSGHLLV----QLRHLG-TFLAPSCQFPVLPQAALAAGAVALGTGLVG-VGASR 85

  Fly    77 E--NSCALTSYSVVMLVLLVSQLA-----LIIYVWVDHV---QIQQSLEK-IVQTIWDQRKTDA- 129
            .  |:.....:..|:..|||:..|     |::.:.:...   .:.::||: :|..:...:.|:. 
Human    86 ASLNAALYPPWRGVLGPLLVAGTAGGGGLLVVGLGLALALPGSLDEALEEGLVTALAHYKDTEVP 150

  Fly   130 ------LLMDTLQRSFKCCGLNGFAD-YGITY------------------------------PAS 157
                  .|:|.||..:.|||.:|:.| :|:.:                              |.|
Human   151 GHCQAKRLVDELQLRYHCCGRHGYKDWFGVQWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFS 215

  Fly   158 CCDSPSNGTC 167
            ||:..|...|
Human   216 CCNPHSPRPC 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EdNP_523630.1 Tetraspanin 8..216 CDD:459767 44/205 (21%)
ROM1NP_000318.2 peripherin_like_LEL 126..265 CDD:239415 20/100 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 331..351
Blue background indicates that the domain is not in the aligned region.

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